Gene cucsa_pan_p001888
| Sequence ID | cucsa_pan_p001888 add to my list | ||
|---|---|---|---|
| Species | Cucumis sativus | ||
| Alias | No gene alias | ||
| Pangenome status | Core (3/3) | ||
| Length | 360aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 360 amino acids
>cucsa_pan_p001888_CUCSA MGEKVEAAKNDGEKKAAADAGQKKDDGAVTAVFKIDMHCDGCAKKIKRVVKHLNGVSDVK ADPSSNKLTVTGKVDPAVIKTKLEQKTKKKVEIVSPQPKKEGGGDKKPDEKTEKKTDEKA EKKTDEKGEKKADGKSEKKADEKAEKKPEEKKTEEKKAKESTVVLKMRLHCEGCIQKIRR ALIKFKGTNEISVDAQKDLITVKGTIEGKDLQSYLKDKFNRSVEVIPPKKEEPAAGGEKK AKEAGGGGGEKKENDGKAAASSGGDGGSAKVVEVSKYEYSGFSYPPSVFYYDAPAHSHTH QYSQAMEAQPSYPIYGFANSSGYYANPNYVHQGYSTPMNDHSHASQMFSDENPNAYCSVM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for cucsa_pan_p001888
Represented sequence(s):
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| CgUng002500.1 | orthology | 0.547 | 7 | 206 | 5.48e-64 |
| CgUng019980.1 | orthology | 0.547 | 7 | - | - |
| Cm060230.1 | orthology | 0.549 | 5 | - | - |
| FvH4_6g16410.1 | orthology | 0.635 | 3 | 216 | 8.37e-68 |
| MELO3C024466.2.1 | orthology | 0.06 | 1 | 452 | 3.59e-160 |
| Manes.08G010600.1 | orthology | 0.647 | 4 | 197 | 3.73e-60 |
| Manes.09G066300.1 | orthology | 0.674 | 4 | - | - |
| maldo_pan_p018618 | orthology | 0.601 | 3 | 219 | 1.88e-68 |
| maldo_pan_p021518 | orthology | 0.615 | 3 | - | - |
| orange1.1t00956.1 | orthology | 0.55 | 6 | - | - |