Gene cucsa_pan_p008172


Sequence ID cucsa_pan_p008172  add to my list
Species Cucumis sativus
Alias No gene alias
Pangenome status Core (3/3)
Length 154aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 154 amino acids

>cucsa_pan_p008172_CUCSA
MGVLDHLSDYFDCSSHGHKHKKRKQLQTVELKIRIDCEGCERKVKRALEGMKGVKQVDVD
RKANKATVVGYVEPSKVVARVAHRTGKKAELWPYVPYDVVAHPYAPGVYDKKAPAGYVRK
ADDPNVYQLARASSTEVRYTTAFSDENPAACAVM



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397
Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463617 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for cucsa_pan_p008172



Represented sequence(s):
CUCSA_Gy14_v2.0
CUCSA_ASM407_v2.0
KGN43252
CUCSA_PI183967



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Cg8g001620.1 orthology 0.179 3 261 3.13e-91
Cm237380.1 orthology 0.198 4 257 1.76e-89
Cs8g02620.1 orthology 0.185 4 260 9.77e-91
MELO3C013353.2.1 orthology 0.0198 1 293 6.06e-104
Manes.04G076000.1 orthology 0.164 3 260 1.08e-90