Gene cucsa_pan_p014828


Sequence ID cucsa_pan_p014828  add to my list
Species Cucumis sativus
Alias No gene alias
Pangenome status Core (3/3)
Length 492aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 492 amino acids

>cucsa_pan_p014828_CUCSA
IQKCVLKVNIHCDGCKHKVKKILQKIDGVFTTEIDAEQGKVTVTGNVDAAVLIKKLAKSG
KHAEIWGSQPANNNKNQQNNIANQMKNMQIDNAKGGNNKGQNQKGGAAGGGGGGGNGNNL
PKGGHVQGLQPSQLQQLQAMKGFQDLKLPPQFKGLKLPVKDQNPNLPKAGKINLHEDDDL
SDEDDLDDYDDEDYEDDDEFDDDLGNLHLPPANKLKPFMGNAQIPKMVMNGNHPAVINNP
GAGGNGGGNGKKGGGAVPVQVNSNAKNGNNGGGKGNGGGGGGGGNQKQGSGGVGGGGGGK
SNGGGGGGVGGMGNNKTVHGGGNGSNNGMNGGQKAAGGANGMGQDLQSLVGAHGLGMSNL
SQMGQLGQMGDRTMGQMGNLSAVQGLPAAPPAPTMNGNGNGGGAGRFLAEGMTGNPYQQH
PQQYMAQMMNQQQHHALGHQPMMYARPPPAVNYVPPPYPYPYPPPYHNPYPPTQPEPYTY
FSDENPSSCNIM



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for cucsa_pan_p014828



Represented sequence(s):
CUCSA_ASM407_v2.0
KGN57024
KGN57025
CUCSA_Gy14_v2.0

  1. 2. 3. 4.
1. KGN57024 0.00 41.05 -0.00 -0.00
2. KGN57025 41.05 0.00 2.76 1.96
3. CsGy3G013610.1 -0.00 2.76 0.00 0.20
4. evm.model.Chr3.1342_evm.model.Chr3.1343 -0.00 1.96 0.20 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Cg9g004610.1 orthology 0.569 7 - -
Cm080580.1 orthology 0.579 7 - -
Cs9g06110.1 orthology 0.573 6 - -
FvH4_4g14520.1 orthology 0.585 6 - -
MELO3C006564.2.1 orthology 0.0278 1 523 5.66e-184
Manes.03G184400.1 orthology 0.573 5 - -
Manes.15G023400.1 orthology 0.576 5 - -
cajca.ICPL87119.gnm1.ann1.C.cajan_04403.1 orthology 0.624 4 163 1.71e-45
cajca.ICPL87119.gnm1.ann1.C.cajan_04404.1 orthology 0.756 4 - -
cajca.ICPL87119.gnm1.ann1.C.cajan_05307.1 orthology 0.495 3 - -
cicar_pan_p021612 orthology 0.559 3 176 1.36e-49
cicar_pan_p023752 orthology 0.498 3 - -
maldo_pan_p033071 orthology 0.554 6 - -
medtr_pan_p010037 orthology 0.514 3 - -
medtr_pan_p012132 orthology 0.555 3 - -
medtr_pan_p023169 orthology 0.929 2 - -
phavu.G19833.gnm2.ann1.Phvul.003G092500.1 orthology 0.571 3 - -
phavu.G19833.gnm2.ann1.Phvul.006G153400.1 orthology 0.546 4 - -
soybn_pan_p017385 orthology 0.501 4 - -
soybn_pan_p023921 orthology 0.48 4 - -
soybn_pan_p028758 orthology 0.531 4 - -
soybn_pan_p032758 orthology 0.554 4 - -
thecc_pan_p006423 orthology 0.563 5 - -