Gene cucsa_pan_p014828
| Sequence ID | cucsa_pan_p014828 add to my list | ||
|---|---|---|---|
| Species | Cucumis sativus | ||
| Alias | No gene alias | ||
| Pangenome status | Core (3/3) | ||
| Length | 492aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 492 amino acids
>cucsa_pan_p014828_CUCSA IQKCVLKVNIHCDGCKHKVKKILQKIDGVFTTEIDAEQGKVTVTGNVDAAVLIKKLAKSG KHAEIWGSQPANNNKNQQNNIANQMKNMQIDNAKGGNNKGQNQKGGAAGGGGGGGNGNNL PKGGHVQGLQPSQLQQLQAMKGFQDLKLPPQFKGLKLPVKDQNPNLPKAGKINLHEDDDL SDEDDLDDYDDEDYEDDDEFDDDLGNLHLPPANKLKPFMGNAQIPKMVMNGNHPAVINNP GAGGNGGGNGKKGGGAVPVQVNSNAKNGNNGGGKGNGGGGGGGGNQKQGSGGVGGGGGGK SNGGGGGGVGGMGNNKTVHGGGNGSNNGMNGGQKAAGGANGMGQDLQSLVGAHGLGMSNL SQMGQLGQMGDRTMGQMGNLSAVQGLPAAPPAPTMNGNGNGGGAGRFLAEGMTGNPYQQH PQQYMAQMMNQQQHHALGHQPMMYARPPPAVNYVPPPYPYPYPPPYHNPYPPTQPEPYTY FSDENPSSCNIM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for cucsa_pan_p014828
Represented sequence(s):
CUCSA_PI183967
CUCSA_Gy14_v2.0
CUCSA_ASM407_v2.0
| 1. | 2. | 3. | 4. | |
|---|---|---|---|---|
| 1. KGN57024 | 0.00 | 41.05 | -0.00 | -0.00 |
| 2. KGN57025 | 41.05 | 0.00 | 2.76 | 1.96 |
| 3. CsGy3G013610.1 | -0.00 | 2.76 | 0.00 | 0.20 |
| 4. evm.model.Chr3.1342_evm.model.Chr3.1343 | -0.00 | 1.96 | 0.20 | 0.00 |
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Cg9g004610.1 | orthology | 0.569 | 7 | - | - |
| Cm080580.1 | orthology | 0.579 | 7 | - | - |
| Cs9g06110.1 | orthology | 0.573 | 6 | - | - |
| FvH4_4g14520.1 | orthology | 0.585 | 6 | - | - |
| MELO3C006564.2.1 | orthology | 0.0278 | 1 | 523 | 5.66e-184 |
| Manes.03G184400.1 | orthology | 0.573 | 5 | - | - |
| Manes.15G023400.1 | orthology | 0.576 | 5 | - | - |
| cajca.ICPL87119.gnm1.ann1.C.cajan_04403.1 | orthology | 0.624 | 4 | 163 | 1.71e-45 |
| cajca.ICPL87119.gnm1.ann1.C.cajan_04404.1 | orthology | 0.756 | 4 | - | - |
| cajca.ICPL87119.gnm1.ann1.C.cajan_05307.1 | orthology | 0.495 | 3 | - | - |
| cicar_pan_p021612 | orthology | 0.559 | 3 | 176 | 1.36e-49 |
| cicar_pan_p023752 | orthology | 0.498 | 3 | - | - |
| maldo_pan_p033071 | orthology | 0.554 | 6 | - | - |
| medtr_pan_p010037 | orthology | 0.514 | 3 | - | - |
| medtr_pan_p012132 | orthology | 0.555 | 3 | - | - |
| medtr_pan_p023169 | orthology | 0.929 | 2 | - | - |
| phavu.G19833.gnm2.ann1.Phvul.003G092500.1 | orthology | 0.571 | 3 | - | - |
| phavu.G19833.gnm2.ann1.Phvul.006G153400.1 | orthology | 0.546 | 4 | - | - |
| soybn_pan_p017385 | orthology | 0.501 | 4 | - | - |
| soybn_pan_p023921 | orthology | 0.48 | 4 | - | - |
| soybn_pan_p028758 | orthology | 0.531 | 4 | - | - |
| soybn_pan_p032758 | orthology | 0.554 | 4 | - | - |
| thecc_pan_p006423 | orthology | 0.563 | 5 | - | - |