Gene cucsa_pan_p016602


Sequence ID cucsa_pan_p016602  add to my list
Species Cucumis sativus
Alias No gene alias
Pangenome status Core (3/3)
Length 391aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 391 amino acids

>cucsa_pan_p016602_CUCSA
MTKEDDFKLLKFQTCDLRVNIHCDGCRLKVKKLLQRIEGVFQVEIGAENQKVTVLGNVDS
STLINKLVRAGKHAELWSQKGNPSPKPKNKEDKTPNKETKHLKLTTFNCEDDEIADCVEE
GDDYEVAQLQFRDLLRQRAIEANNAGKGGIGISRIPGLVAGNGKMNNNHHHLSINNKPGN
GKKIDPNQPMSIKNTPSEIDRKTLATLKMNNAQLFGNGRESINPGEAKRANNNDLNSMMS
MAGFNGGNLLNFATPSSIDVNSTNTSQGLHLQQNNGYGYGYQPPSTSGFSMATGQYHHQQ
QQQPNFISGYNQYQQQQPSMNMNNMLNRQAMNQQPQMMYNRAQLVPSNTGYYFSYNPSPV
HPSHPNVHGYNSNSAADMFSDENTSSSCSIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for cucsa_pan_p016602



Represented sequence(s):
CUCSA_Gy14_v2.0
CsGy5G019220.1
CUCSA_ASM407_v2.0
KGN51509
CUCSA_PI183967
evm.model.Chr5.1934
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT1G23000.2 orthology 0.938 3 127 6.16e-33
MELO3C005316.2.1 orthology 0.037 1 721 1.55e-265
brana_pan_p046794 orthology 0.948 5 127 3.16e-33
braol_pan_p030024 orthology 0.966 4 122 2.67e-31
brarr_pan_p010319 orthology 0.954 5 123 9.15e-32