Gene cucsa_pan_p020833


Sequence ID cucsa_pan_p020833  add to my list
Species Cucumis sativus
Alias No gene alias
Pangenome status Core (3/3)
Length 281aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 281 amino acids

>cucsa_pan_p020833_CUCSA
MKTIDFFCASQASTAVDQPSSSPAGRFIDRHNPIIADARRSNVTSRTTNFPNPPCSSQYS
PINPLPYHQLHAAAAAASPNVAGDQIRPSGVSGNHKDLKMKKKKKKSSSIITTDFVRWSC
AKPSDLATPPGSMRYLLNDKSVPDGSMDRIPTPIPINKNQPSSNPQDPHHSKPTPQISSQ
DDSNKSPPSNQVVVLRVSLHCRGCEGKLRKHLSKMEGVNSFNIDFAAKKVTIMGNITPQG
MLESVSKVKNAQFWPYADPTPTPTPNPNLNQNHHPNVLKKT



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for cucsa_pan_p020833



Represented sequence(s):
CUCSA_ASM407_v2.0
KGN54216
CUCSA_PI183967
CUCSA_Gy14_v2.0



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT2G37390.1 orthology 1 3 - -
AT3G53530.2 orthology 1 3 135 1.94e-38
MELO3C003095.2.1 orthology 0.0692 1 437 1.1e-156
brana_pan_p029929 orthology 1 5 - -
brana_pan_p030312 orthology 1 5 - -
brana_pan_p031480 orthology 1 4 - -
brana_pan_p036701 orthology 1 5 137 1.12e-38
brana_pan_p041953 orthology 1 4 - -
braol_pan_p003859 orthology 1 4 - -
braol_pan_p015324 orthology 1 4 - -
braol_pan_p021666 orthology 1 4 - -
braol_pan_p031578 orthology 1 4 136 2.22e-38
brarr_pan_p002630 orthology 1 5 139 7.94e-40
brarr_pan_p008392 orthology 1 5 - -
brarr_pan_p026146 orthology 1 5 - -
brarr_pan_p039884 orthology 1 4 - -
cajca.ICPL87119.gnm1.ann1.C.cajan_09762.1 orthology 0.929 4 - -
cajca.ICPL87119.gnm1.ann1.C.cajan_37472.1 orthology 0.884 5 195 2.58e-61
cicar_pan_p008704 orthology 0.946 4 - -
cicar_pan_p017889 orthology 0.969 4 168 1.17e-50
medtr_pan_p001385 orthology 0.952 4 - -
medtr_pan_p025678 orthology 0.968 4 169 2.77e-51
phavu.G19833.gnm2.ann1.Phvul.001G171400.1 orthology 0.941 5 - -
phavu.G19833.gnm2.ann1.Phvul.L001741.1 orthology 0.954 5 187 1.17e-58
soybn_pan_p015281 orthology 0.933 5 - -
soybn_pan_p025035 orthology 0.945 5 - -
soybn_pan_p025142 orthology 0.85 4 201 9.28e-64