Gene ipotf_pan_p003482


Sequence ID ipotf_pan_p003482  add to my list
Species Ipomoea trifida
Alias No gene alias
Pangenome status Core (2/2)
Length 467aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 467 amino acids

>ipotf_pan_p003482_IPOTF
MSKEEFVKIQTCVLKVNIHCEGCKNKVKKILQRIEGVYTINIDSEWGKVTVSGNVDSATL
IKKLVKKGKHAELWGSQKANNNNQNHQLKNLQIDNGKGGNGNKGKGEKGTNIPNQMQMKG
GNPGMVLPQQLQQMKGVQDMKLLPPQFKDLKLPAMNLGGGNPKTVKFDLPEEDGFSDDDE
FDDDDDEYDDDDEYDDDDEDDFDDEMDSMPPNKMKPVMGNGGGGAQMPNIMHLMNGNGKK
GGIMPQMNMGGGHKGGNQIQGGGSPKKSGKNGGGHPQDGKNFGSNGGQNKNNGGGGGGHG
GGGGGGGPNFNGNGGNKGGGIMSNGLPSMPNMMAMKANVPNMGPMPTSQIGHHMGQMGNN
LPMGQIPAVQGLPAPGMSSARGNGGYFQAPGPEILAGNPYQQQQMAAMMMNQQHANGNER
FQPMMYAPQPPAVNYLPPPYPYYPYPPPSDNYGSMFSDENPSACKVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for ipotf_pan_p003482



Represented sequence(s):
IPOTF_NSP306
itf04g15930.t1
IPOTF_Y22
Itr.xfSc0000518.2
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
itb04g16200.t1 orthology 0.0181 1 706 1.09e-256