Gene ipotf_pan_p004891
| Sequence ID | ipotf_pan_p004891 add to my list |
|---|---|
| Species | Ipomoea trifida |
| Alias | No gene alias |
| Pangenome status | Core (2/2) |
| Length | 534aa |
Length: 534 amino acids
>ipotf_pan_p004891_IPOTF MSMPRNISPFVLLIIVTVVLTLAPSCLAALHHQQHYSHRNNVAHNNLNHLHEESGHDSRA YPSYSLEGMRSTRFLASVTTVNVDDYGAKGDGTHDDTVAFQKSWKVACSSIATTAVYFQV SKKNYLLRPISFSGPCKSAITVQIYGSIEASDDRSDYSDDRSHWLKFSSVQNLMVEGDGT INGNGKIWWQNSCKVDKSLALTFHMCNYLIVKNLRIQNAQRMHISFDQCTNVRASNLVVT APGNSPNTDGIHVTKTKNIQISDCTIGTGDDCISIVSGSQNVEATGITCGPGHGISIGSL GSGNSKAYVSNVVVNGAKLSGTANGVRIKTWQGGSGSANNIKFQNIEMNDVKNPIIIDQN YCDQKDPCKHQSSAVQVKNVVYENIAGTSATGIAVKFDCSKNHPCKGILMKNVELVGEGD EIAKAECNNNSRKLVKDSPSEDTISVQFIRYWSSAMAAPKIISALAGSFVIAYVCDHLMA DKKIFGGTTPKTVSEKEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKSADN
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Unknown function duf1138 family
GP002478 |
Unknown function duf1138 family |
| 2 | GP018276 | Unannotated cluster |
| 3 | GP042981 | Unannotated cluster |
| 4 | GP072479 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Pectin lyase fold
IPR012334
|
Pectin lyase fold | Homologous_superfamily |
|
Pectin lyase fold/virulence factor
IPR011050
|
Pectin lyase fold/virulence factor | Homologous_superfamily |
|
Glycoside hydrolase, family 28
IPR000743
|
Glycoside hydrolase, family 28 | Family |
|
Parallel beta-helix repeat
IPR006626
|
Parallel beta-helix repeat | Repeat |
|
Protein of unknown function DUF1138
IPR009515
|
Protein of unknown function DUF1138 | Family |
Figure 1: IPR domains for ipotf_pan_p004891
Represented sequence(s):
IPOTF_NSP306
IPOTF_Y22
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Bv_004250_qxzd.t1 | orthology | 0.689 | 1 | - | - |
| Cc06_g16730 | orthology | 0.792 | 4 | - | - |
| FvH4_6g23630.1 | orthology | 0.85 | 5 | - | - |
| Oeu008921.2 | orthology | 0.959 | 4 | - | - |
| Oeu017948.1 | orthology | 0.948 | 4 | - | - |
| maldo_pan_p043115 | orthology | 0.865 | 5 | - | - |
| thecc_pan_p013986 | orthology | 0.779 | 4 | - | - |
| vitvi_pan_p004955 | orthology | 0.824 | 3 | - | - |
| vitvi_pan_p017163 | orthology | 0.818 | 3 | - | - |
| vitvi_pan_p018667 | orthology | 0.818 | 3 | - | - |
| vitvi_pan_p036875 | orthology | 0.833 | 3 | - | - |