Gene ipotf_pan_p007073


Sequence ID ipotf_pan_p007073  add to my list
Species Ipomoea trifida
Alias No gene alias
Pangenome status Core (2/2)
Length 467aa



Length: 467 amino acids

>ipotf_pan_p007073_IPOTF
MESIFAGTKGLVKNDGAYLLDAILPLLKLICLTVIGLILAHPKTKLVPKATFRLLSKLVF
ALFLPCTIFINLGETITLQNFTNWWFIPVNVILSTAIGCLLGYLVAKICKTPPEYLRFTV
IATGFGNTGNLPLAIVGSVCHSDDNFFGPDCQSTGVSYVSFAQWVAVILVYTLVYHMMEP
PVDYYDVVEDGVEIQEQLPPVSDLSRPLLVEAEWPGMEEKETEHCKTPFIARTFASVSSI
SQSSIEELEFPEEVGLKGPMSIRCLDEEAAPSTVESIRCLVEPRVVRKIRVVAERTPIQH
VLQPPTLATLLAFIVGMVPSLKSIVYGDDAPLSFITDSLDIMAQAMVPSVMLILGGMLAE
GPNESRLGIRTTVGIIVARLLVLPLVGIGVVALADRMSILIPADQMYRFVLLLQYTSPSA
ILLGAVARLRGYAVSEASALLFWQHVFALFSLSLYVIIYFKLLYSYV


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Auxin efflux carrier family
GP000355		 Auxin efflux carrier family
2 GP015273 Unannotated cluster
3 GP040583 Unannotated cluster
4 GP132388 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Sodium/solute symporter superfamily
IPR038770 		Sodium/solute symporter superfamily Homologous_superfamily
Membrane transport protein
IPR004776 		Membrane transport protein Family

IPR038770 IPR004776
Figure 1: IPR domains for ipotf_pan_p007073



Represented sequence(s):
IPOTF_Y22
Itr.xpSc0079059.8
Itr.xpSc0079059.7
IPOTF_NSP306
itf12g03910.t1
Download sequences FASTA

  1. 2. 3.
1. itf12g03910.t1 0.00 0.64 1.47
2. Itr.xpSc0079059.8 0.64 0.00 0.98
3. Itr.xpSc0079059.7 1.47 0.98 0.00