Gene ipotf_pan_p011082


Sequence ID ipotf_pan_p011082  add to my list
Species Ipomoea trifida
Alias No gene alias
Pangenome status Core (2/2)
Length 87aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 87 amino acids

>ipotf_pan_p011082_IPOTF
MSQTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDMKEQKVTVKGNVKPEDVLQTVSKT
GKKTSFWEAEAAAGTETKPNSEAVPTA


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP239638 Unannotated cluster
3 GP341755 Unannotated cluster
4 GP463817 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for ipotf_pan_p011082



Represented sequence(s):
IPOTF_NSP306
itf00g21800.t1
itf05g06080.t1
IPOTF_Y22
Itr.xfSc0000258.8
Download sequences FASTA

  1. 2. 3.
1. itf00g21800.t1 0.00 3.51 -0.00
2. itf05g06080.t1 3.51 0.00 3.98
3. Itr.xfSc0000258.8 -0.00 3.98 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
itb05g05540.t2 orthology 0.0307 1 166 1.31e-55
sorbi_pan_p029424 orthology 0.611 2 - -