Gene ipotf_pan_p012251


Sequence ID ipotf_pan_p012251  add to my list
Species Ipomoea trifida
Alias No gene alias
Pangenome status Core (2/2)
Length 157aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 157 amino acids

>ipotf_pan_p012251_IPOTF
MGILDHLSDMFDCSSGRHYRRRYKKRRQLQTVEMRVKMDCEGCERKVRRSVEGMKGVTST
QVEPKQHKLTVVGYVDPDRVVARVAHRTGKKVELWPYVPYDVVAHPYAPGVYDKKAPAGY
VRRAEDPHVYQLARASSTEVRYTTAFSDDNPAACAVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463617 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for ipotf_pan_p012251



Represented sequence(s):
IPOTF_Y22
Itr.Sc0000046.78
IPOTF_NSP306
itf01g25240.t1
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
itb01g24990.t1 orthology 0 1 320 2.24e-114