Gene ipotf_pan_p020764


Sequence ID ipotf_pan_p020764  add to my list
Species Ipomoea trifida
Alias No gene alias
Pangenome status Core (2/2)
Length 411aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 411 amino acids

>ipotf_pan_p020764_IPOTF
MTKDEDFKHLKIQTCVLKVNIHCDGCKQKVKKILQRIEGVYQVSIDDEQQKVSVAGSVEA
PTLIKKLVRAGKHAELWGSQKGTQNQKQKPSNGNDSKNNSNQNQNSAQKQQQKLMKDLEA
LKSQQGNKFPFLQELEYEMGEDEEEEFECGEEEFRFLNSKFAQQQQQLALLRQQTAEANN
AKNLAGANGGVRLNNGNCGNKKSGISIPNQNVGMKGNSPGGIDEKTMAALRMNLGGEGGK
IGGNDINAMMNLAGFHGNNGGNNVNPTVLLPQQGNNPNPNPTSGFHHHLLQPNQANLIQG
QNGNFPLQGQNGNFPPSLAHHNLMNMNGYPLHHPQASVMMNMQNRHAAMQQAQMMYNRSP
FIPPSTGYYHYNNYGQSPVPPYPTYVDHPSTADHSATHMFSDENPSSCSVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for ipotf_pan_p020764



Represented sequence(s):
IPOTF_NSP306
itf14g00890.t1
IPOTF_Y22
Itr.Sc0000030.77
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Ca_39_644.1 orthology 0.601 5 - -
Ca_74_171.1 orthology 0.601 4 275 1.58e-88
Ca_81_165.8 orthology 0.601 5 - -
Cc11_g08860 orthology 0.601 5 256 8.03e-82
DCAR_007286 orthology 0.717 3 - -
DCAR_030213 orthology 0.681 3 251 4.74e-80
PGSC0003DMP400053180 orthology 0.573 4 172 1.92e-49
Solyc05g008300.1.1 orthology 0.562 4 - -
capan_pan_p003259 orthology 0.514 3 190 4.33e-56
itb14g01030.t1 orthology 0.01 1 682 2.22e-249