Gene ipotf_pan_p021052


Sequence ID ipotf_pan_p021052  add to my list
Species Ipomoea trifida
Alias No gene alias
Pangenome status Dispensable (1/2)
Length 159aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 159 amino acids

>ipotf_pan_p021052_IPOTF
MEPKAEADCVLKVDVQCDECKMKLMEVLSSISGVYSVTIDAEQGIAKVAGEVEPNALLRA
LSRSGKHAELVRVTFRDPRMTRYSNYDRYASSPPPYTQQGYGNGYNAIEDSCARELPEHS
LGYDYPDNNYSGGYLPPAQYLPSFDEYKDADSTSLCAIM




Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP241299 Unannotated cluster
3 GP344409 Unannotated cluster
4 GP489165 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for ipotf_pan_p021052



Represented sequence(s):
IPOTF_NSP306
itf02g24510.t1
itf02g24490.t1
itf02g24500.t1
itf02g24560.t1
itf02g27270.t1
itf02g27750.t1
Unrepresented genome(s):
IPOTF_Y22
Download sequences FASTA

  1. 2. 3. 4. 5. 6.
1. itf02g27750.t1 0.00 7.86 3.20 7.18 7.16 13.19
2. itf02g24490.t1 7.86 0.00 4.51 5.17 13.30 11.54
3. itf02g24510.t1 3.20 4.51 0.00 5.17 7.91 10.73
4. itf02g27270.t1 7.18 5.17 5.17 0.00 12.51 9.92
5. itf02g24500.t1 7.16 13.30 7.91 12.51 0.00 15.73
6. itf02g24560.t1 13.19 11.54 10.73 9.92 15.73 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Oeu049387.1 orthology 1 3 - -
PGSC0003DMP400038366 orthology 1 5 - -
Solyc07g065430.2.1 orthology 1 5 - -
capan_pan_p030197 orthology 1 4 - -
itb02g23000.t1 orthology 0.214 1 - -