Gene itb11g13550.t1


Sequence ID itb11g13550.t1  add to my list
Species Ipomoea triloba
Alias No gene alias
Length 327aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 327 amino acids

>itb11g13550.t1_IPOTR
MGEEEKKAAEKKEDPPSAAGGDEKKAEGEAKPAEESKDAPPPPPPPQEIVLRVFMHCEGC
ARKVRRCLKDFDGVEDVVTDCKTHKVVVKGEKADPVKVLERVQKKSHRQVELLSPIPAPA
PEEEHKKPPEEVAKPEEKKEEPQVITVVLKAHMHCEACAEAIKKRILRMKGVENVEPDFK
GSQVTVRGVFDPQNLVDYVAKKTGKRAVVVKVEPKKDEAAGEKAKEGKEEKKAEEGKKGG
DGDGGEKKEGESGGGEKKEGDGEGVELAEDPKMEMKKHELYYSYYPPIQVNNPNYHHQRF
VAAQDGGYGYGYPQMFSDENPNACSVM





Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545
Heavy metal transport/detoxification group1
3 GP040674 Unannotated cluster
4 GP070448 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for itb11g13550.t1



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
PGSC0003DMP400045992 orthology 0.444 4 230.7 1.4e-60
PGSC0003DMP400046761 orthology 0.496 4 - -
Solyc03g097380.2.1 orthology 0.448 4 270 1.82e-89
Solyc06g072700.2.1 orthology 0.483 4 221.5 8.4e-58
capan_pan_p009765 orthology 0.499 3 - -
capan_pan_p023481 orthology 0.433 3 249 1.59e-81
capan_pan_p035442 orthology 0.53 3 - -
ipotf_pan_p015819 orthology 0.0472 1 412 4.47e-145