Gene maize_pan_p001275


Sequence ID maize_pan_p001275  add to my list
Species Zea mays
Alias No gene alias
Pangenome status Core (4/4)
Length 393aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 393 amino acids

>maize_pan_p001275_MAIZE
MAKKKRSGGGGGQQQKPATAEEGEEQAGDAPPAAEGNKDREHEKGKDKDQEEKGSKGKDK
DGKKPPPQPPVVTAVLKVDMHCDGCAKRIRGSVRRYPGKQRNAMKAPCVEGVAMDVDKGI
MTVVGRLDAKKLRDRVADKTKKKVDLVLGGGGGNSSNNKGGGGNNNKQGGGNQHKGGHEE
DGKQSDKEHGGGEQEGKEKDKGDRQEGEEGTKGKDNNKGGSGGGGKGKGGGGGGGGGKDN
KKPVAPVVATVVLRIGSTGLHCDGCMNRIRRKLYKIKGVEQVRMDLGKNQVTVTGTMDAK
ALPEKLRKKLRRPVDVVAPGSGNKDVKDKDGGGGGGKEKEKEKDGKDGKDAAITKALSAE
LEAWKAAFYDQQSLSNAEFMLSDENPNAACAVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545		 Heavy metal transport/detoxification group1
3 GP040674 Unannotated cluster
4 GP070448 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for maize_pan_p001275



Represented sequence(s):
MAIZE_Mo17_v1.0
ZmMO1704t020775
MAIZE_B73_v4.0
Zm00001d051905
MAIZE_CML247_v1.0
Zm00006a019675
MAIZE_PH207_v1.0
Zm00008a017346_T01
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Sspon.04G0030630-1C orthology 0.185 2 - -
Sspon.04G0030630-1P orthology 0.192 2 294 1.28e-96
Sspon.04G0030630-2D orthology 0.197 2 - -
sorbi_pan_p016427 orthology 0.205 2 296 1.1e-97