Gene maize_pan_p005331


Sequence ID maize_pan_p005331  add to my list
Species Zea mays
Alias No gene alias
Pangenome status Dispensable (2/4)
Length 181aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 181 amino acids

>maize_pan_p005331_MAIZE
MTIVEMHVSIDCDGCEDNVRKALEKLKGVHHVSIDRMHGKVTVTGSVSQRKALRAARRTG
KLAVLWPSAYNNPSYHQAHAMRAYYQYQYQANKPAQAQQHQYYSSVQRAGKNSGGISAVA
TKPAGHQYPQSKASSYNYHVHGYYDSELYGYYHDHEQPGDVVPAAVRSYFSDENPSACSI
M



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397
Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP078604 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for maize_pan_p005331



Represented sequence(s):
MAIZE_B73_v4.0
MAIZE_PH207_v1.0
Unrepresented genome(s):
MAIZE_CML247_v1.0
MAIZE_Mo17_v1.0



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT1G29100.2 orthology 1 3 - -
Sspon.08G0007770-1A orthology 0.171 2 258 2.03e-88
Sspon.08G0007770-2B orthology 0.169 2 - -
brana_pan_p026075 orthology 1 5 - -
braol_pan_p020359 orthology 1 5 - -
brarr_pan_p033912 orthology 1 4 - -
maize_pan_p039298 ultra-paralogy 0.0269 0 - -
sorbi_pan_p008889 orthology 0.188 2 241 3.13e-82