Gene maize_pan_p005331
Sequence ID | maize_pan_p005331 add to my list | ||
---|---|---|---|
Species | Zea mays | ||
Alias | No gene alias | ||
Pangenome status | Dispensable (2/4) | ||
Length | 181aa | ||
Gene Ontology |
Display term(s) (1)
|
Length: 181 amino acids
>maize_pan_p005331_MAIZE MTIVEMHVSIDCDGCEDNVRKALEKLKGVHHVSIDRMHGKVTVTGSVSQRKALRAARRTG KLAVLWPSAYNNPSYHQAHAMRAYYQYQYQANKPAQAQQHQYYSSVQRAGKNSGGISAVA TKPAGHQYPQSKASSYNYHVHGYYDSELYGYYHDHEQPGDVVPAAVRSYFSDENPSACSI M
Multiple alignment used to build consensus sequence:
Clustering Level | Family ID | Family Name |
---|---|---|
1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
2 | Heavy metal transport/detoxification group1
GP015397 |
Heavy metal transport/detoxification group1 |
3 | GP040065 | Unannotated cluster |
4 | GP078604 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
ID | Name | Type |
---|---|---|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for maize_pan_p005331
Represented sequence(s):
Unrepresented genome(s):
MAIZE_B73_v4.0
MAIZE_PH207_v1.0
MAIZE_CML247_v1.0
MAIZE_Mo17_v1.0
Homology | RBH | ||||
---|---|---|---|---|---|
Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
AT1G29100.2 | orthology | 1 | 3 | - | - |
Sspon.08G0007770-1A | orthology | 0.171 | 2 | 258 | 2.03e-88 |
Sspon.08G0007770-2B | orthology | 0.169 | 2 | - | - |
brana_pan_p026075 | orthology | 1 | 5 | - | - |
braol_pan_p020359 | orthology | 1 | 5 | - | - |
brarr_pan_p033912 | orthology | 1 | 4 | - | - |
maize_pan_p039298 | ultra-paralogy | 0.0269 | 0 | - | - |
sorbi_pan_p008889 | orthology | 0.188 | 2 | 241 | 3.13e-82 |