Gene maize_pan_p006690
| Sequence ID | maize_pan_p006690 add to my list | ||
|---|---|---|---|
| Species | Zea mays | ||
| Alias | No gene alias | ||
| Pangenome status | Core (4/4) | ||
| Length | 535aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 535 amino acids
>maize_pan_p006690_MAIZE MSSPAAFFCLGAQTLELKVNIHCDGCLKKVKKVLHKIDGVYQSTVNAAEGKVTVSGLMDP DTVIRKLHKAGKPAQLWGATAKPAVATQLEKLQLKDAGGKGQGQPPKNAGGKGQPPKNAA GKGQGQGQKQQQPKGGAGGAGAGAKVVALPHSQPTPQQLMQMQQQMQMNGMKFAHPELMA MGAGRMPMPMPFPAAAQAQAQAAAAKDPKTVKFDLPGGEEFGDDGSDLDDEFDELDDVDF EDDGLDDDDDGDLYDGPGMVMKPMGMPPAAAAGGGNGNGGGKKGGGGNEVPVQINGNASN GGGAKQNGGGKSGAKNGKGGGGGGGVVAPGGGNQAGQGKPKGGFPGGAGLGGPMMGGAPP PHAGMMMRPPNMMGGAGGFPGMGQMGGHPHMGGGGMPQAGGGAAHGMPAGGSISMAAGGM PGAGFFPRGVGGGMPAGAEMLGMSQLPPQQQQHMAAVMQQQQQHMAAIMQQQQQQMMMMN GHGHGHGHHGHGGYGYGRPAMPQYPPPPAYYYPMPQRHPHDSMFSDENPNGCSVM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for maize_pan_p006690
Represented sequence(s):
MAIZE_PH207_v1.0
MAIZE_Mo17_v1.0
MAIZE_B73_v4.0
MAIZE_CML247_v1.0
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| sorbi_pan_p003695 | orthology | 0.375 | 1 | - | - |
| sorbi_pan_p004143 | orthology | 0.294 | 1 | 206 | 4.11e-59 |
| sorbi_pan_p010782 | orthology | 0.346 | 1 | - | - |