Gene maize_pan_p009159


Sequence ID maize_pan_p009159  add to my list
Species Zea mays
Alias No gene alias
Pangenome status Dispensable (3/4)
Length 91aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 91 amino acids

>maize_pan_p009159_MAIZE
MDYRQSYCMTLRMNIDCNGCYQRIRRALLQMRELEKHLIDKKHGRVVVWGAFSPQDVAIK
IRKRTNRRVEILDLSEASPAAPEGGPDGHMS


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP109350 Unannotated cluster
3 GP119142 Unannotated cluster
4 GP077996 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for maize_pan_p009159



Represented sequence(s):
MAIZE_B73_v4.0
Zm00001d020425
MAIZE_CML247_v1.0
Zm00006a031372
MAIZE_PH207_v1.0
Zm00008a028004_T01
Unrepresented genome(s):
MAIZE_Mo17_v1.0
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
ORGLA09G0073900.1 orthology 0.573 5 130 1.75e-38
bradi_pan_p028263 orthology 0.509 4 129 2.82e-40
musac_pan_p023320 orthology 0.796 3 108 2.19e-32
orysa_pan_p037625 orthology 0.68 5 - -
sorbi_pan_p029803 orthology 0.152 1 164 6.58e-55
tritu_pan_p004118 orthology 0.428 3 - -
tritu_pan_p024914 orthology 0.419 3 - -
tritu_pan_p040052 orthology 0.408 3 149 1.66e-48
tritu_pan_p048949 orthology 0.502 3 - -