Gene maize_pan_p016355
| Sequence ID | maize_pan_p016355 add to my list | ||
|---|---|---|---|
| Species | Zea mays | ||
| Alias | No gene alias | ||
| Pangenome status | Core (4/4) | ||
| Length | 455aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 455 amino acids
>maize_pan_p016355_MAIZE MTKDEEFKLVKIQNHALKVNIHCDGCKHKVKKLLQKIEGVYSVAIDVDNHKVSVTGDVDS ETLIRKLTRGGKHAELWSQHKGGSAQQKQQAQQQQQQKQGANPSKDGHSKSSNNNGGQKK DQGKQGGGGGVGGGLVQGLKAFKNQHGGNKQHHQLPELLSSEDDDGMFDDDDGEFDDDYE EELRFLGDKMSQLGLHGNGNGNNQHHHQNKNGNNVVAVNSNHSNGKKGNGGAAANRHQSQ NQKNVNVVNVAAANGKMGGGGGVQNHKNANAINMAAAANAKMGNGAQRNAGAMGGIGMLG LSHGLGAGGAAAAAPPPGFQQGYAGFNHPPYAAAAGYGGGLQQQQHQQQSNSLMASMQGY HHHQYPAATAAVVNNLRGLNGNMVMMHQPQPQPQPQAQMMYHSSPQISSPYTGYYNPYNY YYHHHPHPGSAGYPASNGDVESMFSDENTKGCVVM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for maize_pan_p016355
Represented sequence(s):
MAIZE_Mo17_v1.0
MAIZE_CML247_v1.0
MAIZE_PH207_v1.0
MAIZE_B73_v4.0
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Dr15259 | orthology | 1 | 4 | 108 | 6.78e-26 |
| Mba02_g23430.1 | orthology | 1 | 5 | 122 | 1.27e-31 |
| Mba03_g01140.1 | orthology | 1 | 5 | - | - |
| Mba10_g22160.1 | orthology | 1 | 5 | - | - |
| Sspon.03G0019370-1A | orthology | 0.175 | 1 | - | - |
| Sspon.03G0019370-2C | orthology | 0.135 | 1 | - | - |
| Sspon.03G0019370-3D | orthology | 0.12 | 1 | - | - |
| XP_008806263.1 | orthology | 0.877 | 4 | - | - |
| XP_010916342.1 | orthology | 0.915 | 6 | - | - |
| XP_010926063.1 | orthology | 0.9 | 5 | - | - |
| XP_019707202.1 | orthology | 0.9 | 5 | - | - |
| XP_026656869.1 | orthology | 0.923 | 5 | - | - |
| cocnu_pan_p016981 | orthology | 0.912 | 5 | - | - |
| cocnu_pan_p021838 | orthology | 0.893 | 6 | - | - |
| cocnu_pan_p035969 | orthology | 0.893 | 6 | - | - |
| maize_pan_p016830 | ultra-paralogy | 0.11 | 0 | - | - |
| musac_pan_p029655 | orthology | 1 | 5 | 126 | 1.44e-32 |
| musac_pan_p029948 | orthology | 1 | 5 | - | - |
| musac_pan_p030748 | orthology | 1 | 4 | - | - |
| musac_pan_p032325 | orthology | 1 | 5 | - | - |
| sorbi_pan_p026568 | orthology | 0.127 | 2 | - | - |