Gene maize_pan_p019962
| Sequence ID | maize_pan_p019962 add to my list | ||
|---|---|---|---|
| Species | Zea mays | ||
| Alias | No gene alias | ||
| Pangenome status | Core (4/4) | ||
| Length | 207aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 207 amino acids
>maize_pan_p019962_MAIZE MAPLLFRDMKGLSCSSPASTAICPSLERQPMVRPHKAIASATASPMSHVPAAPRTHRHDG KKGRQQEEQQQRKAVVVGNAGGLVSPAGSSRYLLSGRFTATEEIQEVESAPAVDVKPKPE EGGEAADAKSAQAQEQVVVLKVSLHCKACAGKVKKHLSKMEGVTSFNIDFAAKKVTVVGD VTPLGVLSSVSKVKNAQLWAAPPAIAA
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP015837 | Unannotated cluster |
| 3 | GP040905 | Unannotated cluster |
| 4 | GP070656 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for maize_pan_p019962
Represented sequence(s):
MAIZE_CML247_v1.0
MAIZE_PH207_v1.0
MAIZE_Mo17_v1.0
MAIZE_B73_v4.0
| 1. | 2. | 3. | 4. | 5. | |
|---|---|---|---|---|---|
| 1. Zm00001d034634 | 0.00 | 1.97 | 1.97 | 0.98 | 1.97 |
| 2. Zm00006a005072 | 1.97 | 0.00 | -0.00 | 1.95 | -0.00 |
| 3. ZmMO1701t005446 | 1.97 | -0.00 | 0.00 | 1.95 | -0.00 |
| 4. ZmMO1703t015727 | 0.98 | 1.95 | 1.95 | 0.00 | 1.95 |
| 5. Zm00008a005630_T01 | 1.97 | -0.00 | -0.00 | 1.95 | 0.00 |
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Sspon.01G0031200-1A | orthology | 0.108 | 2 | 303 | 1.02e-105 |
| Sspon.01G0031200-1P | orthology | 0.108 | 2 | - | - |
| Sspon.01G0031200-2B | orthology | 0.106 | 2 | - | - |
| Sspon.01G0031200-3D | orthology | 0.112 | 2 | - | - |
| maize_pan_p014397 | ultra-paralogy | 0.305 | 0 | - | - |
| maize_pan_p032298 | ultra-paralogy | 0.119 | 0 | - | - |
| maize_pan_p043327 | ultra-paralogy | 0.279 | 0 | - | - |
| sorbi_pan_p010670 | orthology | 0.104 | 2 | - | - |