Gene maize_pan_p022093
| Sequence ID | maize_pan_p022093 add to my list | ||
|---|---|---|---|
| Species | Zea mays | ||
| Alias | No gene alias | ||
| Pangenome status | Dispensable (3/4) | ||
| Length | 379aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 379 amino acids
>maize_pan_p022093_MAIZE MGEEKKTGKGGGGGGGDKKKDAGAGAAPQPIVLKVDLHCAGCANKVRKAIKRAPGVESVT PDMAAGKVVVTGPADAVQLKERIEARAKKPVQIVSAGAGSPKKDKEKKADGGEKNAAKEK GGGDAEKKKADKKKGGGDGGEKNADKKKGGGGGDKKADKEKGTGKPKEEEEEEEKPKEPK EETVTLKIQLHCDGCMDRIKRRICKIKGVKDVAFDAAKDLVKVTGTMDAAVLPAYLREKL SRDVEVVAPGKKDGGGGGDKKGKGAGDGAEKKNKKKDGGAEGKNDRAAAAAAAAASASVA PIPLADAGGMYLMPPHYGYMPYPPAPGGYYGAAPPPNHAGFYANAGVHYPPPTAYGYGPA HLHAPQMFSDENPNACSVM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | Heavy metal transport/detoxification group1
GP015545 |
Heavy metal transport/detoxification group1 |
| 3 | GP040674 | Unannotated cluster |
| 4 | GP071484 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for maize_pan_p022093
Represented sequence(s):
Unrepresented genome(s):
MAIZE_B73_v4.0
MAIZE_Mo17_v1.0
MAIZE_CML247_v1.0
MAIZE_PH207_v1.0
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Sspon.01G0003000-1P | orthology | 0.126 | 2 | - | - |
| Sspon.01G0003000-3D | orthology | 0.128 | 2 | - | - |
| Sspon.01G0018780-1A | orthology | 0.125 | 2 | 403 | 7.24e-140 |
| Sspon.01G0018780-2B | orthology | 0.127 | 2 | - | - |
| maize_pan_p002998 | ultra-paralogy | 0.131 | 0 | - | - |
| maize_pan_p037219 | ultra-paralogy | 0.0417 | 0 | - | - |
| sorbi_pan_p008991 | orthology | 0.119 | 2 | - | - |