Gene maldo_pan_p006711
Sequence ID | maldo_pan_p006711 add to my list | ||
---|---|---|---|
Species | Malus domestica | ||
Alias | No gene alias | ||
Pangenome status | Core (3/3) | ||
Length | 340aa | ||
Gene Ontology |
Display term(s) (1)
|
Length: 340 amino acids
>maldo_pan_p006711_MALDO MTKPDAFFPLFKPHHTFTQSSPLSLFPLHQSLSLSRSSMATKPAEEAPGTLKYQTWVLKV SIHCGGCQKKVKKVLQNIEGVYTTEIDSQQHKVTVTGNVEAETLLKKLLKSGKQAELWPE VKKAKKSKSKNNSNNNEKQPEDHNHEQDGDHDQPDKTDGGDDADDGGESDAEGGESNEAG GESGTSPAVGAGGGNSASTGAKKKKKKKKKAQNGNSPTGGGANLGENAPPPVGSIEPYMA GGPEMTQPMASMNLGPPVQHTYPGPYPTSMYYPPPTYGLSYNTAYPTSTSSSYFAPDPMH TATYSHPGRFSFPLPSYSIDDDGDEDTSVNKEYGSGCYVM
Multiple alignment used to build consensus sequence:
Clustering Level | Family ID | Family Name |
---|---|---|
1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
2 | GP023608 | Unannotated cluster |
3 | GP040483 | Unannotated cluster |
4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
ID | Name | Type |
---|---|---|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for maldo_pan_p006711
Represented sequence(s):
MALDO_Borkh_v3.0.a1
MALDO_HFTH1
MALDO_GDDH13_v1.1
1. | 2. | 3. | 4. | |
---|---|---|---|---|
1. MDP0000205471 | 0.00 | 0.40 | 1.18 | 1.78 |
2. MDP0000511642 | 0.40 | 0.00 | 0.40 | 0.80 |
3. MD03G1282300 | 1.18 | 0.40 | 0.00 | 1.78 |
4. HF02812-RA | 1.78 | 0.80 | 1.78 | 0.00 |
Homology | RBH | ||||
---|---|---|---|---|---|
Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
Cg5g037020.1 | orthology | 0.996 | 7 | 134 | 3.08e-37 |
Cm177940.1 | orthology | 1 | 8 | 135 | 2.65e-37 |
Cs5g32830.1 | orthology | 1 | 8 | 134 | 6.56e-37 |
FvH4_2g25240.1 | orthology | 0.426 | 1 | 204 | 4.75e-64 |
FvH4_3g05420.1 | orthology | 0.492 | 1 | - | - |
Manes.01G216400.1 | orthology | 0.851 | 3 | 153 | 4.36e-44 |
Manes.05G064600.1 | orthology | 0.923 | 3 | - | - |
cajca.ICPL87119.gnm1.ann1.C.cajan_10299.1 | orthology | 1 | 6 | 122 | 2.21e-32 |
cicar_pan_p013771 | orthology | 1 | 6 | 125 | 9.41e-34 |
maldo_pan_p033280 | ultra-paralogy | 0.155 | 0 | - | - |
medtr_pan_p025269 | orthology | 1 | 6 | 124 | 3.68e-33 |
phavu.G19833.gnm2.ann1.Phvul.001G205300.1 | orthology | 1 | 7 | 133 | 2.21e-36 |
soybn_pan_p005697 | orthology | 1 | 7 | 134 | 8e-37 |
soybn_pan_p010098 | orthology | 1 | 7 | - | - |
thecc_pan_p017549 | orthology | 0.989 | 6 | 156 | 5.11e-45 |
vitvi_pan_p002541 | orthology | 0.66 | 2 | - | - |