Gene maldo_pan_p009716
| Sequence ID | maldo_pan_p009716 add to my list | ||
|---|---|---|---|
| Species | Malus domestica | ||
| Alias | No gene alias | ||
| Pangenome status | Core (3/3) | ||
| Length | 387aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 387 amino acids
>maldo_pan_p009716_MALDO MTKEEDFKLLKIQTCVLKVNIHCDGCKQKVKKLLQRIEGVYQVNVDSDQQKVTVSGCVDS ATLIKKLLRAGKHAELWSQKSNNQSQKEKNNCIKDDKNNNNKGHKQGILKNQQKFPSFSS EEDDDSLDDEEEDDEDELRFIRGMLRQQQQQQANDAKKSAGVINAAAAAAPNNVKMMNNV GIVNAGKKGGHPNENMKVNPGGIDPKTMAALKMNAAQMGGGNINPGEAKRGNMNDLSAMM NLAGFHGNGGNVAANAAALGANPNVLGGFQAQANPNAAGFPSGGYSTGQIGQFPSSMLMN PNGYAHPSQMMNMQARQAAMQQQPQMMYHRSPLVPPSTGYYNYNPSPGPSFYPAAAAYPY GGEPNYGSNNTAAHMFSDENTSSCSIM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for maldo_pan_p009716
Represented sequence(s):
MALDO_HFTH1
MALDO_Borkh_v3.0.a1
MALDO_GDDH13_v1.1
| 1. | 2. | 3. | 4. | |
|---|---|---|---|---|
| 1. MDP0000126820 | 0.00 | 1.85 | 142.77 | 0.26 |
| 2. MDP0000244595 | 1.85 | 0.00 | 142.53 | 1.55 |
| 3. MD13G1026700 | 142.77 | 142.53 | 0.00 | 142.77 |
| 4. HF42087-RA | 0.26 | 1.55 | 142.77 | 0.00 |
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Cg2g033940.2 | orthology | 0.321 | 4 | 293 | 1.26e-96 |
| Cm053230.1 | orthology | 0.326 | 5 | 312 | 7.36e-104 |
| FvH4_4g32260.1 | orthology | 0.32 | 1 | - | - |
| Manes.15G126600.1 | orthology | 0.395 | 4 | - | - |
| Manes.17G075400.1 | orthology | 0.383 | 4 | - | - |
| cajca.ICPL87119.gnm1.ann1.C.cajan_07848.1 | orthology | 0.451 | 5 | - | - |
| cicar_pan_p014991 | orthology | 0.457 | 5 | - | - |
| maldo_pan_p033106 | ultra-paralogy | 0.0834 | 0 | - | - |
| medtr_pan_p032193 | orthology | 0.465 | 5 | - | - |
| orange1.1t04788.1 | orthology | 0.327 | 5 | - | - |
| phavu.G19833.gnm2.ann1.Phvul.007G038000.1 | orthology | 0.461 | 6 | - | - |
| soybn_pan_p012384 | orthology | 0.429 | 6 | - | - |
| soybn_pan_p023139 | orthology | 0.423 | 6 | - | - |
| thecc_pan_p016247 | orthology | 0.37 | 4 | - | - |
| vitvi_pan_p018179 | orthology | 0.327 | 3 | - | - |
| vitvi_pan_p040075 | orthology | 0.367 | 3 | - | - |