Gene medtr_pan_p017806


Sequence ID medtr_pan_p017806  add to my list
Species Medicago truncatula
Alias No gene alias
Pangenome status Core (2/2)
Length 323aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 323 amino acids

>medtr_pan_p017806_MEDTR
MFVGIATAIVNQKIHNSETLIGCAGATGLAVMIIILSTGHISGAHLNPAVPLYIAAQVLA
SICASFTLKGVFHPFMSGGVTVPSVEYGQAFALEFIISFNLMFVVTAVATDTRAVNYKQL
ESLFEAYLSSRVTPMGEEEKKTEEPKKKEETKPEETKDEAAVPAPPPAEILLKVFMHCES
CARKVRRSLKDFPGVEEVIADCKSHTVVVKGEKAEPLKVLERVQKKSHRKVELLSPIPIA
PEEEKPAEEEKAAPEEEKKDEPQIVITVLKVHMHCEACAEEIKKRILKMNVTTNMRLKLI
INSKAKAWPYSTEGTVTPPLING



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545
Heavy metal transport/detoxification group1
3 GP040674 Unannotated cluster
4 GP070448 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily
Major intrinsic protein
IPR000425
Major intrinsic protein Family
Aquaporin-like
IPR023271
Aquaporin-like Homologous_superfamily

IPR006121 IPR036163 IPR000425 IPR023271
Figure 1: IPR domains for medtr_pan_p017806



Represented sequence(s):
MEDTR_Mt4.0v2
MEDTR_A17_r5.0



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
cicar_pan_p021928 orthology 0.563 1 - -
medtr_pan_p007423 ultra-paralogy 0.373 0 - -
medtr_pan_p030239 ultra-paralogy 0.207 0 - -