Gene medtr_pan_p025269
| Sequence ID | medtr_pan_p025269 add to my list | ||
|---|---|---|---|
| Species | Medicago truncatula | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 306aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 306 amino acids
>medtr_pan_p025269_MEDTR MAAAKPAADQQVPPGLETLKYQTWVLKVLIHCDGCTKRVKKILQGIEGVYRTEIDSRQHK VTVTGNVDAETLIKKLSRSGKSVELWPEKPPEKKDKKSSKSKGETENIINKEIKEDQKNS TEHIGESSHEGCIDDAGDDGEEDSDHKEGNNGDKNNNKSEGGAKKKKKKKKKNKSGSASL TPNNGGGKEIISTETIDSPQVLEKVNAIPKEIIMPPVLPQQHAYNPYPPHMYYPHPPPAV APPYGLSYNTSYPVSSTSSYYVGAPVMPMHANYSRLPPPPPPSHPINNYGHHNDHEEYEG GYCSIM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for medtr_pan_p025269
Represented sequence(s):
MEDTR_Mt4.0v2
MEDTR_A17_r5.0
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Cg5g037020.1 | orthology | 1 | 4 | 146 | 3.66e-42 |
| Cm177940.1 | orthology | 1 | 5 | 147 | 2.22e-42 |
| Cs5g32830.1 | orthology | 1 | 5 | 150 | 1.87e-43 |
| FvH4_2g25240.1 | orthology | 1 | 6 | 114 | 8.96e-30 |
| FvH4_3g05420.1 | orthology | 1 | 6 | - | - |
| Manes.01G216400.1 | orthology | 1 | 4 | 141 | 4.61e-40 |
| Manes.05G064600.1 | orthology | 1 | 4 | - | - |
| cicar_pan_p013771 | orthology | 0.324 | 1 | 239 | 3.75e-78 |
| maldo_pan_p006711 | orthology | 1 | 6 | 126 | 1.16e-33 |
| maldo_pan_p033280 | orthology | 1 | 6 | - | - |
| thecc_pan_p017549 | orthology | 0.994 | 3 | 128 | 6.99e-35 |
| vitvi_pan_p002541 | orthology | 1 | 5 | - | - |