Gene musac_pan_p002002


Sequence ID musac_pan_p002002  add to my list
Species Musa acuminata
Alias No gene alias
Pangenome status Core (4/4)
Length 135aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 135 amino acids

>musac_pan_p002002_MUSAC
MGRSALVRVLDCLSLAVSPGSCVCMNTWEEEEEDGFEEKSLIKSHVEQVLKIKDVLDGGK
TTLAFHLEPKTVVLRVSMHCNGCARKVEKHISKMEGVTSFQVDLANKKVVVVGDITPFEV
LKSVSKVKFAELWLT


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for musac_pan_p002002



Represented sequence(s):
MUSAC_Macbu1
Mabur_Contig5200_t000050
MUSAC_Macze1
Mazeb_scaffold55121_t000010
MUSAC_Macma2
Ma01_t08020.1
MUSAC_Macba2
Maban_Contig157_t001780
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Dr20434 orthology 0.671 3 160 5.81e-52
Mba01_g17650.1 orthology 0 1 268 1.61e-94
ORGLA01G0170900.1 orthology 1 4 - -
XP_008776942.1 orthology 0.365 2 - -
XP_008809019.1 orthology 0.329 3 - -
XP_010925099.1 orthology 0.358 4 - -
XP_010939249.1 orthology 0.383 3 - -
bradi_pan_p042928 orthology 1 5 - -
cocnu_pan_p000998 orthology 0.409 3 - -
cocnu_pan_p007495 orthology 0.401 4 - -
maize_pan_p021681 orthology 1 5 - -
sorbi_pan_p016251 orthology 1 5 - -
tritu_pan_p003582 orthology 1 5 - -