Gene musac_pan_p027316
| Sequence ID | musac_pan_p027316 add to my list |
|---|---|
| Species | Musa acuminata |
| Alias | No gene alias |
| Pangenome status | Core (4/4) |
| Length | 412aa |
Length: 412 amino acids
>musac_pan_p027316_MUSAC MGFWSLLLVASTPVVQVLLIGLLGAYLASGYSNVLLPGARRDMNKVVFTVFTPALMFASL AKTVTFQEIISWWFMPVNIGITFLIGGILGWIVVKILRPPNHIEGLVIAACSAGNLGNLL LIIIPAICEEDGNPFGDYKICSARGISYVSFSMALGAFYIWTHSYSLMRNAGKMYHATRT ASLGVTGANEGGHGVSVDQESVLSPPVKAVQGMAQHQIEIPLLSGGNLQDKKVNLWDKIK ETLHKIVEELLAPPTVAAIVGFVVGAVPWLKTLFIGSSAPLKVVQDSMKLLGDGTVPCIT LILGGNLTQGLRKSVVRPVLIVAIVCVRYVILPAFGIAVVKAAYGLGFVPHDPLYRYVLM VQFGLPPAMSIGTMAQLFDVAQEECSVIFLWTYLIAAVSLTVWSTVFMWILS
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Auxin efflux carrier family
GP000355 |
Auxin efflux carrier family |
| 2 | GP015273 | Unannotated cluster |
| 3 | GP040583 | Unannotated cluster |
| 4 | GP463648 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Membrane transport protein
IPR004776
|
Membrane transport protein | Family |
Figure 1: IPR domains for musac_pan_p027316
Represented sequence(s):
MUSAC_Macma2
MUSAC_Macba2
MUSAC_Macze1
MUSAC_Macbu1
| 1. | 2. | 3. | 4. | 5. | |
|---|---|---|---|---|---|
| 1. Maban_Contig991_t000260 | 0.00 | -0.00 | 0.24 | 6.25 | -0.00 |
| 2. Mabur_Contig15284_t000040 | -0.00 | 0.00 | 0.24 | 6.25 | -0.00 |
| 3. Ma10_t08300.1 | 0.24 | 0.24 | 0.00 | 6.25 | -0.00 |
| 4. Mazeb_scaffold52581_t000010 | 6.25 | 6.25 | 6.25 | 0.00 | -0.00 |
| 5. Mazeb_scaffold32683_t000010 | -0.00 | -0.00 | -0.00 | -0.00 | 0.00 |