Gene musac_pan_p028206
| Sequence ID | musac_pan_p028206 add to my list |
|---|---|
| Species | Musa acuminata |
| Alias | No gene alias |
| Pangenome status | Core (4/4) |
| Length | 293aa |
Length: 293 amino acids
>musac_pan_p028206_MUSAC MVALRGKELQLNEEELEDSNVGDVDDEEFESESESEPEEVAVSEPAKNAVYNKEALLEKL DDIAWPQNVEWIHKLTVDHAVDQEVDVNDDLARELAFYTQALDGTRQAFEKLQSMGIPFL RPPDYYAEMVKSDAHMLKVKGKLLVEKKKIEEAEERKKAREAKKLAKEVQAQKTKERAKR KKEDIESVKRWRKQRQQSGFARGKDEELDLSPDEEKSFEKSKKRRTGVAPGDRSGGFRRK GGNEKGRKQREFREAKFGHGGRKGMKKQNTAESTNDFKGFNKDKFSASKRKKK
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Unknown function duf1138 family
GP002478 |
Unknown function duf1138 family |
| 2 | GP018276 | Unannotated cluster |
| 3 | GP042981 | Unannotated cluster |
| 4 | GP075980 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Eukaryotic rRNA processing
IPR008610
|
Eukaryotic rRNA processing | Family |
Figure 1: IPR domains for musac_pan_p028206
Represented sequence(s):
MUSAC_Macba2
MUSAC_Macze1
MUSAC_Macbu1
MUSAC_Macma2
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Dr07834 | orthology | 0.371 | 1 | 320 | 1.04e-109 |
| XP_008783111.1 | orthology | 0.224 | 3 | 375 | 1.87e-131 |
| XP_008783112.1 | orthology | 0.224 | 3 | - | - |
| XP_010927787.1 | orthology | 0.281 | 3 | - | - |
| XP_010927788.1 | orthology | 0.281 | 3 | 342 | 9.73e-119 |
| cocnu_pan_p002116 | orthology | 0.294 | 3 | 348 | 5.4e-121 |
| musac_pan_p025447 | ultra-paralogy | 0.149 | 0 | - | - |
| musac_pan_p038614 | ultra-paralogy | 0.174 | 0 | - | - |