Gene orysa_pan_p004946


Sequence ID orysa_pan_p004946  add to my list
Species Oryza sativa
Alias No gene alias
Pangenome status Dispensable (6/7)
Length 235aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 235 amino acids

>orysa_pan_p004946_ORYSA
MAKEQDQLIKRVELKVSVNCCDGCRSKVLKALNLKGVLRTEVHPTAGRVAVVGDVDAGRL
VKRLAKVGKIAEVIVVAQPSPEVERRRRDVGGGKKEASPDNGKMGGGTAPKHGGADDDKR
GETNGGAGSGASSARIHGGGDDDVKAAMCCYHRAEPPAMAVPVLQPPYYAANFTMPPPQP
PAAAYGFGGCYHGTPSPAMAPCRRGRIPVVRPQPTRFADECCMYGDDDIAGCHVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP080800 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for orysa_pan_p004946



Represented sequence(s):
ORYSA_Nipponbare_v7.0
LOC_Os08g10490.1
ORYSA_MH63_v1.0
OsMH_08T0094800
ORYSA_Kitaake_v3.1
OsKitaake08g067000.1
ORYSA_ZS97_v1.0
OsZS_08T0096600
ORYSA_N22_v1.0
A2J10_08T0059800
ORYSA_IR8_v1.0
OsIR8_08T0066800
Unrepresented genome(s):
ORYSA_R498_IGDB_v3.0
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
ORGLA08G0053400.1 orthology 0.0314 1 203 5.88e-66
tritu_pan_p024398 orthology 0.999 2 - -