Gene orysa_pan_p018138


Sequence ID orysa_pan_p018138  add to my list
Species Oryza sativa
Alias No gene alias
Pangenome status Core (7/7)
Length 356aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 356 amino acids

>orysa_pan_p018138_ORYSA
MAKKKKRTGGGEQPKPASDVAEDKPAEDTSPDVQQPHLNAATTTAAPGTDDKDASTKADD
PKKDAKEKEKKPAALPVVTAVLNVDMHCDGCAKRIRASIRHYPGVEGVAMEVDKGTMTVV
GRFDAKKLRDRVANKTKKKVDLLPNNKKAGDDNDNKNNKANECDGKPADKKQQQQEDDGD
EAGKEDKKKKKEKEEQDDQKKKKAKDKKKPVVPVPGTVVLKIGAVGLHCDGCMNRIRTKL
FHIQGVEQVAMEMAKNQVTVTGTMDIKALPEKLRKKLRRPVDVVPPGKQKDKDGGKDKDK
EKQDGGKDGGGGGKDAAAKALTAEKEAWKAAFYDQQALLATEFMLSDENPNACSIA


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545		 Heavy metal transport/detoxification group1
3 GP040674 Unannotated cluster
4 GP070448 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for orysa_pan_p018138



Represented sequence(s):
ORYSA_MH63_v1.0
OsMH_02T0576800
ORYSA_Nipponbare_v7.0
LOC_Os02g57360.1
ORYSA_R498_IGDB_v3.0
OsR498G0205013100.01.T01
OsR498G0205012900.01.T01
ORYSA_N22_v1.0
A2J10_02T0409100
ORYSA_ZS97_v1.0
OsZS_02T0605900
ORYSA_Kitaake_v3.1
OsKitaake02g385200.1
ORYSA_IR8_v1.0
OsIR8_02T0364700
Download sequences FASTA

  1. 2. 3. 4. 5. 6. 7. 8.
1. OsIR8_02T0364700 0.00 1.44 2.57 1.44 1.44 -0.00 2.34 2.06
2. OsKitaake02g385200.1 1.44 0.00 1.41 -0.00 -0.00 0.37 114.93 2.29
3. OsMH_02T0576800 2.57 1.41 0.00 1.41 1.41 -0.00 1.87 0.50
4. A2J10_02T0409100 1.44 -0.00 1.41 0.00 -0.00 0.37 114.93 2.29
5. LOC_Os02g57360.1 1.44 -0.00 1.41 -0.00 0.00 0.37 114.93 2.29
6. OsR498G0205013100.01.T01 -0.00 0.37 -0.00 0.37 0.37 0.00 114.93 -0.00
7. OsR498G0205012900.01.T01 2.34 114.93 1.87 114.93 114.93 114.93 0.00 1.87
8. OsZS_02T0605900 2.06 2.29 0.50 2.29 2.29 -0.00 1.87 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
ORGLA02G0326500.1 orthology 0.0117 1 557 1.39e-201