Gene sorbi_pan_p004683


Sequence ID sorbi_pan_p004683  add to my list
Species Sorghum bicolor
Alias No gene alias
Pangenome status Core (2/2)
Length 177aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 177 amino acids

>sorbi_pan_p004683_SORBI
MGGAMRQLLSFLRAINGRPREKKRKTTTTTLRRRRLVQTVVELRVRMDCERCEREVKKAL
SGIRGVQHVEVNRLQQKVTVTGEVDPAAVLRRAQSTGKKAEPWPGPGPQSTAGYYGPSAA
ALYGFGAAQLQAHDGRWANPAGYYYPYYPAPVMEAAIGAEQITSLFSDDNPNACSVM



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397
Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463617 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for sorbi_pan_p004683



Represented sequence(s):
SORBI_Tx430_v1.0
SORBI_BTx623_v3.1.1



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
HanXRQChr11g0339531 orthology 1 4 - -
Sspon.04G0003210-2C orthology 0.178 2 259 2.81e-89
bradi_pan_p043115 orthology 0.672 5 130 3.73e-39
maize_pan_p029187 orthology 0.193 1 238 5.98e-81
orysa_pan_p045119 orthology 0.683 5 152 2.72e-47
tritu_pan_p006814 orthology 0.623 4 - -
tritu_pan_p048029 orthology 0.606 4 144 2.18e-44