Gene sorbi_pan_p007985


Sequence ID sorbi_pan_p007985  add to my list
Species Sorghum bicolor
Alias No gene alias
Pangenome status Core (2/2)
Length 391aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 391 amino acids

>sorbi_pan_p007985_SORBI
MLKETILTVQTCDLKVDINCDGCVKRIKKILHKIDGVYQTNVNRQQGKLTVTGLMDMDTV
FKKLKKAGMSAQLWEDADSSAVSKHQKLQLGGSDMGDQLKDASGKGLPQGEASSSGGGCA
AGSSGGTNDATMMLPQLTPLEQHLQNIQQQIEQRLTLKGEKLPPHIMGMPPVINRGGKQS
DKKIGGGTKVLVPGNANNDNKKDVGTKLYQDAGGSQVKNGGTGQLPHNLGSLNNHSQAKT
DISIGVGSQMMGGSMAPQKRGMMRPTNNMNGPSSFPNMGETGGMSMGPYTQMGGYNMQSS
YGGSAVHGLGMPANSLPRDGYYPSGAGSSRSEIIQQVAKKPMLQQPYMMGDNNGHGRLQQ
QYPPPMYYPMPLPPQHDNIFSDEDPDICSSM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for sorbi_pan_p007985



Represented sequence(s):
SORBI_Tx430_v1.0
3381.casb008g155990.635.1
SORBI_BTx623_v3.1.1
Sobic.008G126400.1
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Cg2g030800.1 orthology 1 7 - -
Cm135850.2 orthology 1 6 - -
Cs3g13440.2 orthology 1 7 - -
FvH4_6g05480.1 orthology 1 1 - -
Manes.08G122800.1 orthology 1 4 - -
Manes.09G164500.1 orthology 1 4 - -
maldo_pan_p000798 orthology 1 2 - -
maldo_pan_p029348 orthology 1 2 - -
thecc_pan_p017754 orthology 1 5 - -