Gene sorbi_pan_p016427
| Sequence ID | sorbi_pan_p016427 add to my list | ||
|---|---|---|---|
| Species | Sorghum bicolor | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 385aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 385 amino acids
>sorbi_pan_p016427_SORBI MVLIDRSQKKRSGGGGGGQQNKAAEEGEENAPAAPNAGDASPAAEGNKDKEHDKGKDSDK EKDQQEKGKGKGKDKDKDGGTKKPPPVVTAVLKVDMHCDGCAKRIHGSVHRYPGVEGVAM EVDKGSMTVVGRFDAKKLRDRVANKTRKHVDLVGGGGSGSNNKGAGAGGGNQQKCANDEE GKQPGKGRDQEGKDKDKADRQEEGKGKEKEKDDKQGGSGGGGGGGKGKGGGGGKDNKKPV VPVVATVVLKIGSTGLHCDGCMNRIRSKLFKIKGVEQVRMDMAKNQVTVTGTMDAKALPE KLRKKLRRPVDVVAPGKDKDGKEKDGKEGGGKDGKDGKEKDGKDAATKALTAEMEAWKAA FYDQQSLINAEFMLSDENPNACAVM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | Heavy metal transport/detoxification group1
GP015545 |
Heavy metal transport/detoxification group1 |
| 3 | GP040674 | Unannotated cluster |
| 4 | GP070448 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for sorbi_pan_p016427
Represented sequence(s):
SORBI_BTx623_v3.1.1
SORBI_Tx430_v1.0
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Sspon.04G0030630-1C | orthology | 0.12 | 1 | - | - |
| Sspon.04G0030630-1P | orthology | 0.127 | 1 | - | - |
| Sspon.04G0030630-2D | orthology | 0.131 | 1 | 371 | 5.42e-127 |
| maize_pan_p001275 | orthology | 0.205 | 2 | 310 | 4.83e-103 |