Gene sorbi_pan_p019648


Sequence ID sorbi_pan_p019648  add to my list
Species Sorghum bicolor
Alias No gene alias
Pangenome status Core (2/2)
Length 371aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 371 amino acids

>sorbi_pan_p019648_SORBI
MAAAAEEGPEPLRYQTLALRVSIHCEGCKKKVKKVLHSIEGVYKTDIDTQQHKVVVIGNV
SVDALVKKLLKSGKHAEPWPEPAAPPAPPADGGSPPGGSPGSSGGGGKKKKKKKSNKSPA
AAATNNKPAEPAEGTGGPSPPEQHDKADGGASCDEASDGEQDKPEAGGGGGGGGNGSPDA
GEAHESGASGKVPPSAMTPHGPQPIAPPANGNGGGGGGGKKKGKKGGHGNGNGNGNGNGN
ANGGGSAGAGAIAEVHPPPDGPMKPAAGNSGPLTVVDAGPYPPPPPAAAMMSYPGYYAGG
GVHPPAYVMSYSTAHPSSALRSSAYYHPMAGAAYTPGAGGGYFYSTAPPVSAAPGSYYMF
SEENANACSVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for sorbi_pan_p019648



Represented sequence(s):
SORBI_Tx430_v1.0
3381.casb010g181190.635.1
SORBI_BTx623_v3.1.1
Sobic.009G045600.1
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Sspon.07G0012960-1A orthology 0.0583 2 - -
Sspon.07G0012960-2B orthology 0.0623 2 - -
Sspon.07G0012960-3D orthology 0.0606 2 417 1.4e-145
cocnu_pan_p024954 orthology 0.642 2 - -
maize_pan_p020073 orthology 0.097 2 373 1.32e-128