Gene sorbi_pan_p025511


Sequence ID sorbi_pan_p025511  add to my list
Species Sorghum bicolor
Alias No gene alias
Pangenome status Core (2/2)
Length 168aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 168 amino acids

>sorbi_pan_p025511_SORBI
MGGTLEYLSGLLGVGGSGSHDHENKKKKRKQLQTVELKVRMDCEGCELKVRSTLSSMKGV
ESVEINRKQQKVTVVGYVEATKVLKKAQSTGKKAELWPYVPYNLVAQPYVAGTYDKRAPP
GYVRSVEPAAGYVVAASSQLQAAAGGRPPGDHLTDMFNDENPNSCSVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463617 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for sorbi_pan_p025511



Represented sequence(s):
SORBI_Tx430_v1.0
3381.casb004g101370.635.1
SORBI_BTx623_v3.1.1
Sobic.002G382500.1
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Mba07_g10470.1 orthology 0.591 3 - -
Sspon.02G0033800-1B orthology 0.0584 1 263 3.2e-91
Sspon.02G0033800-2C orthology 0.0777 1 - -
XP_008798426.1 orthology 0.43 3 - -
XP_010916917.1 orthology 0.417 3 - -
XP_010926254.1 orthology 0.495 4 206 7.31e-69
cocnu_pan_p024481 orthology 0.517 4 - -
cocnu_pan_p026004 orthology 0.414 3 - -
cocnu_pan_p035557 orthology 0.516 3 - -
musac_pan_p025676 orthology 0.606 3 - -