Gene sorbi_pan_p026568


Sequence ID sorbi_pan_p026568  add to my list
Species Sorghum bicolor
Alias No gene alias
Pangenome status Core (2/2)
Length 447aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 447 amino acids

>sorbi_pan_p026568_SORBI
MTKDEEFKLVKIQNHVLKVNIHCDGCRHKVKKLLQKIEGVYSVAIDVDNHKVSVTGDVDS
ETLIRKLTRGGKHAELWSQQKGGGGGNQGHKGNNGQQKHQQHQQHQQHNQQQQQQQQQKQ
GANPGKDAHNKNNNNGGQKEQGKQGGVGSLMQGLKAFKNQHSNKNQLPELSSEDDDLYDD
EDDEFDDDYEEELRFLGDKMSQLGFHSNNHHQNQNKNGNNAAVNNNHNNGNGKKGNGGGA
NHHQNTHHQNQKNVNVINMAAANAKMGGGGVQNQKNANAINMAAAANAKMAAANGAQRNA
GAMSGMLGLSHGLGAGAAAPGFQGYTGFNHPSYAAAGYGGLQQQHLQQQQSNNLMASMQG
YHHHPATTAAMMNNLRGLNSNMMMMHQPQQQPQMMYHSSPQISPYTGYYNPYNYYYHPHP
GSAGYPASNGDVETMFSDENTKGCVVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for sorbi_pan_p026568



Represented sequence(s):
SORBI_BTx623_v3.1.1
Sobic.003G089300.1
SORBI_Tx430_v1.0
3381.casb016g232640.635.1
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Dr15259 orthology 0.942 3 108 8.43e-26
Mba02_g23430.1 orthology 1 4 122 1.14e-31
Mba03_g01140.1 orthology 0.925 4 - -
Mba10_g22160.1 orthology 0.976 4 - -
Sspon.03G0019370-1A orthology 0.0892 2 - -
Sspon.03G0019370-2C orthology 0.0492 2 - -
Sspon.03G0019370-3D orthology 0.034 2 341 1.89e-113
XP_008806263.1 orthology 0.778 3 - -
XP_010916342.1 orthology 0.816 5 139 8.01e-37
XP_010926063.1 orthology 0.801 4 - -
XP_019707202.1 orthology 0.801 4 - -
XP_026656869.1 orthology 0.824 4 127 2.64e-32
cocnu_pan_p016981 orthology 0.813 4 - -
cocnu_pan_p021838 orthology 0.794 5 132 4.53e-35
cocnu_pan_p035969 orthology 0.794 5 - -
maize_pan_p016355 orthology 0.127 2 - -
maize_pan_p016830 orthology 0.088 2 336 1.95e-111
musac_pan_p029655 orthology 1 4 126 1.28e-32
musac_pan_p029948 orthology 0.972 4 - -
musac_pan_p030748 orthology 0.908 3 - -
musac_pan_p032325 orthology 0.907 4 - -