Gene soybn_pan_p021997
Sequence ID | soybn_pan_p021997 add to my list | ||
---|---|---|---|
Species | Glycine max | ||
Alias | No gene alias | ||
Pangenome status | Core (2/2) | ||
Length | 135aa | ||
Gene Ontology |
Display term(s) (1)
|
Length: 135 amino acids
>soybn_pan_p021997_SOYBN MGKLGRVLDTFCLSFGSNTCFCMNSMEFEDEFEKKPLIVSDSDHKLRLKDVVDGKQTLAF QLKPQIVTLRVSMHCHGCAKKVEKHISKLEGVSSYKVDLETKIVVVMGDILPSEVLQSVS KVKNAELWNFQASKE
Multiple alignment used to build consensus sequence:
Clustering Level | Family ID | Family Name |
---|---|---|
1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
2 | GP015837 | Unannotated cluster |
3 | GP040905 | Unannotated cluster |
4 | GP070656 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
ID | Name | Type |
---|---|---|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for soybn_pan_p021997
Represented sequence(s):
SOYBN_ZH13
SOYBN_Wm82_a2_v1.0
1. | 2. | 3. | 4. | |
---|---|---|---|---|
1. Glyma07g09760.1 | 0.00 | 3.78 | 13.51 | -0.00 |
2. Glyma09g32030.1 | 3.78 | 0.00 | 10.15 | 3.78 |
3. SoyZH13_09G169500.m1 | 13.51 | 10.15 | 0.00 | 13.51 |
4. SoyZH13_07G083200.m1 | -0.00 | 3.78 | 13.51 | 0.00 |
Homology | RBH | ||||
---|---|---|---|---|---|
Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
MELO3C025323.2.1 | orthology | 0.533 | 4 | 109 | 3.22e-32 |
cajca.ICPL87119.gnm1.ann1.C.cajan_27569.1 | orthology | 0.0456 | 1 | 259 | 3.55e-91 |
cucsa_pan_p016074 | orthology | 0.517 | 4 | - | - |
phavu.G19833.gnm2.ann1.Phvul.004G161300.1 | orthology | 0.0526 | 2 | 253 | 1.34e-88 |