Gene soybn_pan_p023139


Sequence ID soybn_pan_p023139  add to my list
Species Glycine max
Alias No gene alias
Pangenome status Core (2/2)
Length 407aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 407 amino acids

>soybn_pan_p023139_SOYBN
MTKEEDFKLLKIQTCVLKVNIHCDGCKQKVKKLLQRIEGVYQVQIDAEQQKVTVSGSVDS
ATLIKKLVRAGKHAELWSQKINQNQKQKNNNAKDDKNKGQKQALVKGLEAFKNQQKFPAF
SSEEDEYYYDDEDDEEDEDEEMRFLREKANQLQMLKQQTANANNVRKGMGAIAAGANNGK
TNNGDNANSGKKGGPNHQNMGMKDSPNGGLDQKTMAALKFNNGHLGGDGLNLNLGEAKRA
NDIGAMMNLAGFNGNNCANNVGSATVLGGNNNSNGLGGFPVQSNNNMIPGSAAAFSNGGL
SGGQYPSSLLMNMNGFNNHPSPSPLMMNMNMQQARQAMQQQPQMMYHRSPFVPPNTGYYY
NHSSYSPAHYSYSYGLPSYPAAAGGGDDHSAAHMFSDDNTSSSCSIM



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for soybn_pan_p023139



Represented sequence(s):
SOYBN_ZH13
SOYBN_Wm82_a2_v1.0



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Cg2g033940.2 orthology 0.359 7 - -
Cm053230.1 orthology 0.364 8 - -
FvH4_4g32260.1 orthology 0.488 6 - -
Manes.15G126600.1 orthology 0.433 7 - -
Manes.17G075400.1 orthology 0.421 7 - -
cajca.ICPL87119.gnm1.ann1.C.cajan_07848.1 orthology 0.1 2 - -
maldo_pan_p009716 orthology 0.423 6 - -
maldo_pan_p033106 orthology 0.456 6 - -
orange1.1t04788.1 orthology 0.365 8 - -
phavu.G19833.gnm2.ann1.Phvul.007G038000.1 orthology 0.0945 1 - -
soybn_pan_p012384 ultra-paralogy 0.0403 0 - -
thecc_pan_p016247 orthology 0.408 7 - -
vitvi_pan_p018179 orthology 0.318 4 - -
vitvi_pan_p040075 orthology 0.358 4 - -