Gene soybn_pan_p023921
| Sequence ID | soybn_pan_p023921 add to my list | ||
|---|---|---|---|
| Species | Glycine max | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 492aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 492 amino acids
>soybn_pan_p023921_SOYBN MSKEEFLKIQKCVLKVNIHCDGCKNKVKKILQKIDGVFTTEIDAEQGKVTVSGNVDPNVL IKKLAKSGKHAELWGAPKGNNNIQNNMANQFKNMQIDNNGKGGGNNKGQKGGGGNNQPKG NNQQGQNPQQQLQQHLQQLQHMKGFQDLKLPQFKDMKLPNPNPNPNPKAVKFSLPEEDDL SDDELDEFDDEFDDEFDDDEMDDPQHPLNKMMMMKPPMGGKPPVGNVPMGNGASMMLNSM MNAQKGGNGGGGNGKKGGGGGGGGPVPVQVHNMGGGNEGKNGNGGKKGGGGNNQNQGGGN KNNGGKNGGGMPEGKNGNSKNNGGGGIPNNNGNGGKKGNNGMGEGVQAMNMFPNMGGHNP SMVGANMGPMNNMSIPMGNMPMTQMGNIPAVQGLPAAAAMNGGAAGGGYFQGGGGGPDMM PGGNSYQQQQYMAAMMNQQRAMGNDRFQPMMYARPPMAVNYMYPPPYSYPPPPHEPYSNY FSDENTSSCSVM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for soybn_pan_p023921
Represented sequence(s):
SOYBN_ZH13
SOYBN_Wm82_a2_v1.0
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Cg9g004610.1 | orthology | 0.454 | 8 | - | - |
| Cm080580.1 | orthology | 0.464 | 8 | - | - |
| Cs9g06110.1 | orthology | 0.458 | 7 | - | - |
| FvH4_4g14520.1 | orthology | 0.47 | 7 | - | - |
| MELO3C006564.2.1 | orthology | 0.467 | 4 | - | - |
| Manes.03G184400.1 | orthology | 0.458 | 6 | - | - |
| Manes.15G023400.1 | orthology | 0.461 | 6 | - | - |
| cajca.ICPL87119.gnm1.ann1.C.cajan_05307.1 | orthology | 0.11 | 2 | 284 | 3.75e-91 |
| cucsa_pan_p014828 | orthology | 0.48 | 4 | - | - |
| maldo_pan_p033071 | orthology | 0.44 | 7 | - | - |
| phavu.G19833.gnm2.ann1.Phvul.006G153400.1 | orthology | 0.127 | 1 | - | - |
| soybn_pan_p017385 | ultra-paralogy | 0.0459 | 0 | - | - |
| thecc_pan_p006423 | orthology | 0.448 | 6 | 221 | 3.06e-66 |