Gene soybn_pan_p025312


Sequence ID soybn_pan_p025312  add to my list
Species Glycine max
Alias No gene alias
Pangenome status Core (2/2)
Length 168aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 168 amino acids

>soybn_pan_p025312_SOYBN
MTSLKSSERKMMKRGFMCHSRASTAVCMSTRDPRSVVVPKKLERRVFLDDTRLINYAKYS
KLVEPPRSSPVPKIKLRGQEQDQANNEPREFQKKQTDNNVFQVVVMRVAIHCQGCAGKVK
KHLSKMEGVTSFSIDVESKRVTVMGHISPVEVLESISKVKRAEFWTAC


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for soybn_pan_p025312



Represented sequence(s):
SOYBN_Wm82_a2_v1.0
Glyma08g07911.1
Glyma05g24751.1
SOYBN_ZH13
SoyZH13_08G070900.m1
SoyZH13_05G109000.m1
Download sequences FASTA

  1. 2. 3. 4.
1. Glyma08g07911.1 0.00 6.22 6.87 -0.00
2. Glyma05g24751.1 6.22 0.00 0.60 5.91
3. SoyZH13_05G109000.m1 6.87 0.60 0.00 6.59
4. SoyZH13_08G070900.m1 -0.00 5.91 6.59 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
FvH4_5g30890.1 orthology 0.713 5 - -
Oeu026170.2 orthology 0.794 3 107 1.73e-30
cajca.ICPL87119.gnm1.ann1.C.cajan_22881.1 orthology 0.0932 2 281 1.6e-98
cocnu_pan_p025689 orthology 0.622 4 - -
maldo_pan_p006499 orthology 0.904 5 - -
phavu.G19833.gnm2.ann1.Phvul.002G207200.1 orthology 0.0963 2 291 1.19e-102