Gene thecc_pan_p002960


Sequence ID thecc_pan_p002960  add to my list
Species Theobroma cacao
Alias No gene alias
Pangenome status Core (2/2)
Length 383aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 383 amino acids

>thecc_pan_p002960_THECC
MATSEGKADTKQEAKATESKEAEENQEPPLKYKAWVLKVSIHCEACKRKVEKTLRKIDGV
YEAIADLKQQKATVKANLHVDVETLIKKLIKKGRHAELWPEKAGQKEKKQGKSKNKDKQS
GQANGDQEGNSNRGGDKEKEAVKAESTVQQDTAKSCENGSTAKNAEGCNNVSKAHEGGSA
PCKTGGQVKESKPDQVKQTVILAAGNQSPVAERKGGGGGGDSEGNAGEKSGGGGGGSSGS
KKNKKKGQKGNANANANLDEGEHSGDAGPAFIGSRLPVYGPHGPVPMPSPASYSPPRHHQ
MYEYPTYSHAPPVYVTSYNTAYPSSSYSAAYYASSPYSYAYMHPGPMSERPPSDQGIYPY
YSSQPSDSFEMFSDENPNACSIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for thecc_pan_p002960



Represented sequence(s):
THECC_Criollo_v2.0
Tc05v2_t025900.1
THECC_Matina1_6_v1.1
Thecc1EG026647t1
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Cm091290.1 orthology 0.363 2 207 4.32e-63
Cm308920.1 orthology 0.363 2 - -
Cs3g14250.1 orthology 0.409 2 140 2.52e-38