Gene thecc_pan_p009145


Sequence ID thecc_pan_p009145  add to my list
Species Theobroma cacao
Alias No gene alias
Pangenome status Core (2/2)
Length 241aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 241 amino acids

>thecc_pan_p009145_THECC
MGHGQQHQGGGQIVEVKLEKSCENNQEKGAKDSNKGKEIVLKVYMHCEGCAAKVFNCLKG
FQGVEQVKTDMEGDRVIVKGQNADPLKILERVKKKYSRNAELISPKPKPKATDGKQSQNK
QEPPIKFVVLKMYMHCEGCANDIKRSIGRMKGILNVEPDMKKSTVTVRGNFDPPKLVEAI
AKQFGKYAEIVAEGPTDKANGTGKQGKEEEIMFHYPPQYSLQHIYPTQIFSDENILSCSI
M


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545		 Heavy metal transport/detoxification group1
3 GP040674 Unannotated cluster
4 GP070448 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for thecc_pan_p009145



Represented sequence(s):
THECC_Matina1_6_v1.1
Thecc1EG008612t1
THECC_Criollo_v2.0
Tc02v2_t017140.1
Tc03v2_t012970.1
Download sequences FASTA

  1. 2. 3.
1. Tc02v2_t017140.1 0.00 1.67 0.42
2. Tc03v2_t012970.1 1.67 0.00 1.67
3. Thecc1EG008612t1 0.42 1.67 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT3G02960.1 orthology 0.875 3 233 3.41e-77
Cg7g016680.1 orthology 0.907 4 214 1.67e-70
Cm174370.1 orthology 0.906 3 213 8.01e-70
Cs7g11080.1 orthology 0.914 4 226 1.17e-74
Manes.13G008700.1 orthology 0.779 2 240 1.7e-80
brana_pan_p048220 orthology 0.916 4 227 4.12e-74
braol_pan_p002896 orthology 0.909 4 223 4.46e-73
brarr_pan_p015545 orthology 0.905 3 227 1.9e-74
orange1.1t05450.1 orthology 0.914 4 - -
thecc_pan_p020513 ultra-paralogy 0.198 0 - -