Gene thecc_pan_p016610


Sequence ID thecc_pan_p016610  add to my list
Species Theobroma cacao
Alias No gene alias
Pangenome status Core (2/2)
Length 355aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 355 amino acids

>thecc_pan_p016610_THECC
MPHIFCLSNIPYSCTNEIHLLILRSYSLLRHLHLSYKTIICSRFLHFPLLLGLMVPELEK
ARVTEIQVRMDCNGCVQKIRKALHGIQGIYEVYPDITQQKLTVVGWADPERIVKAIRKTR
KVATICSHSEPTEAAVQPTEQPPEGGPPAPEAVNPPPSEAPPAEAAPQPQSQPEAAPPAE
PPKDQPPPENPQPEPARAPAAATDANASGQQPPQPSGPKDVGDVHVICQHPPDCGHRYGY
VHSYGGPWSRQYPNNKGNFYPEPLSRHPNSQVFHHEPPQPAFVTHSYNTYKPSPYVTEYK
YVHSPPRSTHYSRIDHYNEDYHNNYISGSSSSSSHGNGNITSMFSDENPNACRIM



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397
Heavy metal transport/detoxification group1
3 GP047778 Unannotated cluster
4 GP077656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for thecc_pan_p016610



Represented sequence(s):
THECC_Criollo_v2.0
THECC_Matina1_6_v1.1



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Cg9g002000.1 orthology 0.438 3 233 1.3e-74
Cm229420.1 orthology 0.441 3 228 2.92e-72
Cs9g03680.1 orthology 0.455 2 211 9.81e-66
FvH4_4g18950.1 orthology 0.528 3 208 4.15e-65
Manes.15G008800.1 orthology 0.468 2 258 2.53e-84
cajca.ICPL87119.gnm1.ann1.C.cajan_04327.1 orthology 0.803 4 - -
cajca.ICPL87119.gnm1.ann1.C.cajan_31773.1 orthology 0.664 5 199 1.74e-62
cicar_pan_p002360 orthology 0.879 5 163 1.7e-48
maldo_pan_p004517 orthology 0.538 3 245 1.31e-78
maldo_pan_p022412 orthology 0.557 3 - -
medtr_pan_p024125 orthology 0.903 5 143 8.64e-41
phavu.G19833.gnm2.ann1.Phvul.003G108900.1 orthology 0.877 5 171 2.76e-51
soybn_pan_p005812 orthology 0.801 4 181 3.35e-55
soybn_pan_p009634 orthology 0.835 5 - -
soybn_pan_p012740 orthology 0.635 5 - -
vitvi_pan_p020280 orthology 0.391 3 226 4.19e-72