Gene tritu_pan_p026778


Sequence ID tritu_pan_p026778  add to my list
Species Triticum turgidum
Alias No gene alias
Pangenome status Core (2/2)
Length 521aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 521 amino acids

>tritu_pan_p026778_TRITU
MSKEEVLKIQTCVLKVNIHCDGCQKKVKKILHKIEGVYQSSIDPEQGKVTVSGMVDPDTI
IKKLTKAGKPAELWGSKAGMANQFQKLQLDGGGKGQAKDAGGKGQSKDAGGAKGQKGGGG
GGGAGGASKDAKMMMPPPTAQQLQQLQQQMQMKGMKLPQFMDGKMPFAAAAPMKDPKSVK
FNLPPEDEFGDDGSEFDDEFDDFDDEDDFDDDGLDDDYFDDPKMMMKPMAMPPNAGGGDK
KGGNNGGKKGGNEIPVQIKGNPNNGGGGGGGGSKKDAGGKQNQGGGGGNGNGGGKNGGGG
QANNAKGGGGGAPGGGGQPGQPGKKGGGGGPGLGVVGPMGGIGMPPQQQAMMRPNMMGAA
GFPGGMGPMGGPMGHHPHMGGAQGGGGVAHGMPAGGMPPPGFFQGGAGGGMPSGPAEMMQ
AAGNPMAQQQYMAMMQHQQQMMMQQQQQQQQAAMLNAHAHPHPHHGGGGAPAGYPAMPMG
YGYGRPPMPYPMAYPMPMQPHPHADPYNYFSDENPNSCSVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for tritu_pan_p026778



Represented sequence(s):
TRITU_Svevo_v2.0
TRIDC5Av2G098250.2
TRIDC5Bv2G073520.2
TRITU_Zavitan_v1.1
TraesCS5A02G133900.1
TraesCS5B02G131600.1
TraesCS5D02G141600.1
Download sequences FASTA

  1. 2. 3. 4. 5.
1. TRIDC5Av2G098250.2 0.00 2.97 2.35 0.19 2.97
2. TRIDC5Bv2G073520.2 2.97 0.00 2.94 2.97 0.77
3. TraesCS5D02G141600.1 2.35 2.94 0.00 2.54 2.94
4. TraesCS5A02G133900.1 0.19 2.97 2.54 0.00 2.97
5. TraesCS5B02G131600.1 2.97 0.77 2.94 2.97 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
HORVU5Hr1G040920.2 orthology 0.0479 1 285 1.31e-90