Gene tritu_pan_p029517


Sequence ID tritu_pan_p029517  add to my list
Species Triticum turgidum
Alias No gene alias
Pangenome status Core (2/2)
Length 148aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 148 amino acids

>tritu_pan_p029517_TRITU
MTIVEMCVHMCCAGCEKKIRKAVERLEGVDAVEIDMEMQKVTVNGDVDQKKVLKTVRRTG
KRAVLWPTPFIAGAGAGGAVNLLAQQHQYHPGGAQMYATHASGPTSSYNYYKHGYDDSRL
YGANSAVVGGTRATDYFSDENPGGCSVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP078604 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for tritu_pan_p029517



Represented sequence(s):
TRITU_Zavitan_v1.1
TraesCS3B02G329600.1
TraesCS3D02G295000.1
TRITU_Svevo_v2.0
TRIDC3Bv2G155510.1
TRIDC3Av2G177830.1
Download sequences FASTA

  1. 2. 3. 4.
1. TRIDC3Av2G177830.1 0.00 1.36 1.36 1.36
2. TRIDC3Bv2G155510.1 1.36 0.00 -0.00 1.36
3. TraesCS3B02G329600.1 1.36 -0.00 0.00 1.36
4. TraesCS3D02G295000.1 1.36 1.36 1.36 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
HORVU3Hr1G072940.2 orthology 0.0455 1 281 5.35e-99
Mba03_g16740.1 orthology 0.483 4 - -
XP_008813766.1 orthology 0.594 5 164 5.8e-53
XP_010920018.1 orthology 0.607 6 161 1.44e-51
bradi_pan_p002062 orthology 0.166 2 224 1.34e-76
cocnu_pan_p020915 orthology 0.615 6 - -
musac_pan_p001588 orthology 0.503 4 168 1.08e-54