Gene tritu_pan_p029988
| Sequence ID | tritu_pan_p029988 add to my list |
|---|---|
| Species | Triticum turgidum |
| Alias | No gene alias |
| Pangenome status | Core (2/2) |
| Length | 432aa |
Length: 432 amino acids
>tritu_pan_p029988_TRITU MMERRSLMEALVTAAQGGSTDTSVLSMLKYAVLPIAKVFTVCFMGFLMATKYVNILQPNG RKLLNGLVFSLLLPCLIFSQLGSAITLEKLVQWWYIPVNIVVGAVSGSLIGFVVASIIRP PYPYFKFTVIHIGIGNIGNIPLVLIAALCRDPSNPFGDSEKCSQDGNAYISFGQWVGAII VYTYVFKMLSPPPGETFDGEEEKLPVLASEENAMPELGKYPTGTHTSTVPEDEPLLALEG NQKGSTSLGSKILSCARCVVKFLKDKQLLQPPIIASVFAIGIGVVPFLKGLIFTDDAPLF FFTDSCLILGEAMIPCILLAVGGNLVDGPGEGSKRLGVRTTVAIIFARLILVPIAGVGIV MLVDKLGFIPKDDKMFKFVLLLQHSMPTSVLSGAVANLRGCGKESAAILFWVHIFAVFSM AGWIIFYLTLLF
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Auxin efflux carrier family
GP000355 |
Auxin efflux carrier family |
| 2 | GP015273 | Unannotated cluster |
| 3 | GP040583 | Unannotated cluster |
| 4 | GP132349 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Membrane transport protein
IPR004776
|
Membrane transport protein | Family |
Figure 1: IPR domains for tritu_pan_p029988
Represented sequence(s):
TRITU_Svevo_v2.0
TRITU_Zavitan_v1.1
| 1. | 2. | 3. | 4. | 5. | |
|---|---|---|---|---|---|
| 1. TRIDC3Av2G197370.2 | 0.00 | 3.76 | 0.23 | 0.46 | 0.23 |
| 2. TRIDC3Bv2G170810.1 | 3.76 | 0.00 | 4.15 | 3.38 | 3.76 |
| 3. TraesCS3A02G341400.1 | 0.23 | 4.15 | 0.00 | 0.70 | 0.46 |
| 4. TraesCS3B02G373500.1 | 0.46 | 3.38 | 0.70 | 0.00 | 0.46 |
| 5. TraesCS3D02G335100.1 | 0.23 | 3.76 | 0.46 | 0.46 | 0.00 |
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| HORVU3Hr1G080640.13 | orthology | 0.0116 | 1 | 834 | 1.13e-308 |