Gene tritu_pan_p033683
| Sequence ID | tritu_pan_p033683 add to my list | ||
|---|---|---|---|
| Species | Triticum turgidum | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 420aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 420 amino acids
>tritu_pan_p033683_TRITU MTKDEDFKLVKIQTHVLRVNIHCDGCKHKVKKLLQRIEGVYSVAIDVDNHKVTVTGSVDS ETLIRKLTRGGKHAELWSHQKGGNGGNNNNQGHKGGGGGGNNNQQKQQQQQQQQKQAANV SKDGGGKGNGGQKEQGKLGGGGVGSLMQGLKAFKSQHSKHQLPELSSDDDDDDMYDDEDD EEDDEFDDEYEDDLRFLGDKMSQLGILRQRAEAAAAINAKNKNAANVGGKKGAPAGNNHH QSNQNQKMNMGAAAGNAKMGNGAPKNTGGIGGLMGLNHGGLGAAGAAPGIQGYTGGGGFS HPSSYGAAGYGGLQQQQQQQQNGNLMASMQGYHNNPAAAAAMMNNLRGNMMMHQPQAQPQ MMYHRSPQISPYTAYYNPYSYYYQQPGGGGGGSSAYHPGAGTGDVETMFSDENTKGCAIM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for tritu_pan_p033683
Represented sequence(s):
TRITU_Svevo_v2.0
TRITU_Zavitan_v1.1
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Dr15259 | orthology | 0.877 | 3 | - | - |
| HORVU3Hr1G004420.1 | orthology | 0.091 | 1 | - | - |
| Mba02_g23430.1 | orthology | 0.992 | 4 | - | - |
| Mba03_g01140.1 | orthology | 0.86 | 4 | - | - |
| Mba10_g22160.1 | orthology | 0.911 | 4 | - | - |
| XP_008806263.1 | orthology | 0.713 | 3 | - | - |
| XP_010916342.1 | orthology | 0.751 | 5 | - | - |
| XP_010926063.1 | orthology | 0.736 | 4 | - | - |
| XP_019707202.1 | orthology | 0.736 | 4 | - | - |
| XP_026656869.1 | orthology | 0.759 | 4 | - | - |
| cocnu_pan_p016981 | orthology | 0.748 | 4 | - | - |
| cocnu_pan_p021838 | orthology | 0.729 | 5 | - | - |
| cocnu_pan_p035969 | orthology | 0.729 | 5 | - | - |
| musac_pan_p029655 | orthology | 0.971 | 4 | - | - |
| musac_pan_p029948 | orthology | 0.907 | 4 | - | - |
| musac_pan_p030748 | orthology | 0.843 | 3 | - | - |
| musac_pan_p032325 | orthology | 0.842 | 4 | - | - |
| tritu_pan_p038784 | ultra-paralogy | 0.0364 | 0 | - | - |
| tritu_pan_p048092 | ultra-paralogy | 0.0317 | 0 | - | - |