Gene vitvi_pan_p029858


Sequence ID vitvi_pan_p029858  add to my list
Species Vitis vinifera
Alias No gene alias
Pangenome status Dispensable (2/3)
Length 235aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 235 amino acids

>vitvi_pan_p029858_VITVI
MAKEEKIKEEKVDAVTTAVYKVNLHCRQCAREIQKPLLRAQGIHKVDADIEAGEIRVKGL
IHTKKIQERIEKLSKKKVEIVSPQAKIKDSVATEKTVKVNTKEIVRTTTIKVHMHCEKCE
HDLRRKLLRRTDIYSVKTDMKAQKLTVEGTVESDKLIGYIRKKVHKHAEIIAPKPEKEEE
KKEDVKVEQISITTTQTVEFMEDKSTKVDNVPYFIHCAYDPELFSDENPNACCIL


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545		 Heavy metal transport/detoxification group1
3 GP342504 Unannotated cluster
4 GP464372 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for vitvi_pan_p029858



Represented sequence(s):
VITVI_12X.2
Vitvi15g01371.t01
VITVI_CabernetSauvignon_v1.0
VvCabSauv08_P0124F.ver1.0.g513760.m02
VvCabSauv08_P0124F.ver1.0.g513760.m01
VvCabSauv08_P0265F.ver1.0.g583260.m01
VvCabSauv08_P0265F.ver1.0.g583260.m02
Unrepresented genome(s):
VITVI_Carmenere_v1.0
Download sequences FASTA

  1. 2. 3. 4. 5.
1. Vitvi15g01371.t01 0.00 2.35 4.28 2.35 4.28
2. VvCabSauv08_P0124F.ver1.0.g513760.m02 2.35 0.00 3.25 -0.00 2.83
3. VvCabSauv08_P0265F.ver1.0.g583260.m02 4.28 3.25 0.00 2.83 -0.00
4. VvCabSauv08_P0124F.ver1.0.g513760.m01 2.35 -0.00 2.83 0.00 2.83
5. VvCabSauv08_P0265F.ver1.0.g583260.m01 4.28 2.83 -0.00 2.83 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AUR62023334-RA orthology 0.774 2 201 9.94e-65
AUR62037999-RA orthology 0.811 2 - -
Bv1_016920_ytts.t1 orthology 0.803 2 190 7.18e-61