Gene vitvi_pan_p029918


Sequence ID vitvi_pan_p029918  add to my list
Species Vitis vinifera
Alias No gene alias
Pangenome status Dispensable (2/3)
Length 311aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 311 amino acids

>vitvi_pan_p029918_VITVI
MGEEAKEQAPAEVKPEAEEKKEEKAEEKKEEKPEEPKEEPKPPLPFVLFVDLHCVGCAKK
IERSLMKIRGVEEVMIDMAQNQVTIKGIVEPQAVCNRIMKKTKRRAKVLSPLPEAEGEPM
PEVVSSQVSGLTTVELNVNMHCEACAAQLKRKILKMRGVQTAETELSTSKVTVTGTMDAD
RLVDYVYRRTKKQARIVPQPEPEKQEENKEGEKPAEETKPEEKKEENAEKAEEGKPPEEA
KKGEEGNGGENNESKEEKGGENKEEGKVGEIPMDDETMKRMMYYYQPLYVIERMPPPQLF
SDENPNACCIS


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545		 Heavy metal transport/detoxification group1
3 GP126431 Unannotated cluster
4 GP077890 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for vitvi_pan_p029918



Represented sequence(s):
VITVI_Carmenere_v1.0
VvCarFPS02VCR702_v1_PsGc_1221.ver1_0.g050500.m01
VvCarFPS02VCR702_v1_Hc0104F_001.ver1_0.g585550.m01
VITVI_12X.2
Vitvi16g02059.t01
Vitvi10g01989.t01
Vitvi10g01293.t01
Vitvi15g01323.t01
Unrepresented genome(s):
VITVI_CabernetSauvignon_v1.0
Download sequences FASTA

  1. 2. 3. 4. 5. 6.
1. Vitvi16g02059.t01 0.00 5.84 11.08 11.16 0.97 0.32
2. Vitvi10g01293.t01 5.84 0.00 4.69 4.72 5.17 5.87
3. Vitvi15g01323.t01 11.08 4.69 0.00 -0.00 10.35 11.16
4. Vitvi10g01989.t01 11.16 4.72 -0.00 0.00 10.42 11.16
5. VvCarFPS02VCR702_v1_Hc0104F_001.ver1_0.g585550.m01 0.97 5.17 10.35 10.42 0.00 0.65
6. VvCarFPS02VCR702_v1_PsGc_1221.ver1_0.g050500.m01 0.32 5.87 11.16 11.16 0.65 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
vitvi_pan_p008661 ultra-paralogy 0.0057 0 - -