Gene vitvi_pan_p043448


Sequence ID vitvi_pan_p043448  add to my list
Species Vitis vinifera
Alias No gene alias
Pangenome status Specific (1/3)
Length 76aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 76 amino acids

>vitvi_pan_p043448_VITVI
MSCEGCVGAVKRVLGKMEGVESFDIDLKEQKVTVKGNVQPDAILKTVSKTGKKTSFWEAE
ASAEPGAKPAETVPVA




Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP239638 Unannotated cluster
3 GP341755 Unannotated cluster
4 GP463817 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for vitvi_pan_p043448



Represented sequence(s):
VITVI_CabernetSauvignon_v1.0
VvCabSauv08_P0053F.ver1.0.g429250.m01
Unrepresented genome(s):
VITVI_12X.2
VITVI_Carmenere_v1.0


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
cajca.ICPL87119.gnm1.ann1.C.cajan_24641.1 orthology 0.442 4 - -
cicar_pan_p009659 orthology 0.517 3 - -
medtr_pan_p015003 orthology 0.518 3 - -
phavu.G19833.gnm2.ann1.Phvul.007G103800.1 orthology 0.43 4 - -
soybn_pan_p011435 orthology 0.412 3 - -
soybn_pan_p033763 orthology 0.413 3 - -
thecc_pan_p006409 orthology 0.243 2 - -
vitvi_pan_p027163 ultra-paralogy 0.0184 0 - -
vitvi_pan_p043537 ultra-paralogy 0.0184 0 - -