GreenPhylDB v2.0 comprises 16 full genomes from the major phylum of plant evolution. Clustering of these genomes was performed to define a consistent and extensive set of homeomorphic plant families. Based on this, lists of gene families such as plant or species specific families and aseveral tools are provided to faciltate comparative genomics within plant genomes.
analyses follow two main steps: gene family
clustering and phylogenomic analysis of
the generated families. Once a group of sequences (cluster) is validated, phylogentic analyses are performed to predict homolog relationships such as orthologs and ultraparalogs.